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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14921 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PARP3
ENSSSCG00000023033
ENSG00000041880
Poly(ADP-ribose) polymerase family member 3
Low tissue specificity
Detected in all
PARP4
ENSSSCG00000022957
ENSG00000102699
Poly(ADP-ribose) polymerase family member 4
Low tissue specificity
Detected in all
PARP6
ENSSSCG00000001929
ENSG00000137817
Poly(ADP-ribose) polymerase family member 6
Low tissue specificity
Detected in all
PARP8
ENSSSCG00000016882
ENSG00000151883
Poly(ADP-ribose) polymerase family member 8
Tissue enhanced
Detected in all
lymphoid tissue:
53.7
testis:
44.4
PARP9
ENSSSCG00000027709
ENSG00000138496
Poly(ADP-ribose) polymerase family member 9
Low tissue specificity
Detected in all
PARS2
ENSSSCG00000003843
ENSG00000162396
Prolyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
PARVA
ENSSSCG00000028827
ENSG00000197702
Parvin alpha
Tissue enhanced
Detected in all
smooth muscle:
89.0
PARVB
ENSSSCG00000000024
ENSG00000188677
Parvin beta
Tissue enhanced
Detected in many
skeletal muscle:
39.7
PARVG
ENSSSCG00000000025
ENSG00000138964
Gamma-parvin
Tissue enhanced
Detected in many
lymphoid tissue:
38.8
stomach:
21.2
PASK
ENSSSCG00000016378
ENSG00000115687
PAS domain containing serine/threonine kinase
Tissue enhanced
Detected in many
testis:
32.8
PATL1
ENSSSCG00000013124
ENSG00000166889
PAT1 homolog 1, processing body mRNA decay factor
Low tissue specificity
Detected in all
PATZ1
ENSSSCG00000010027
ENSG00000100105
POZ/BTB and AT hook containing zinc finger 1
Low tissue specificity
Detected in all
PAWR
ENSSSCG00000036560
ENSG00000177425
Pro-apoptotic WT1 regulator
Low tissue specificity
Detected in many
PAX2
ENSSSCG00000010556
ENSG00000075891
Paired box 2
Tissue enhanced
Detected in some
ductus deferens:
41.9
epididymis:
182.3
kidney:
41.0
male glands:
82.9
PAX9
ENSSSCG00000001942
ENSG00000198807
Paired box 9
Group enriched
Detected in some
esophagus:
41.4
male glands:
77.7
mouth:
25.3
salivary gland:
21.1
upper respiratory system:
33.8
PAXBP1
ENSSSCG00000012037
ENSG00000159086
PAX3 and PAX7 binding protein 1
Low tissue specificity
Detected in all
PAXIP1
ENSSSCG00000025221
ENSG00000157212
PAX interacting protein 1
Low tissue specificity
Detected in all
PAXX
ENSSSCG00000038428
ENSG00000148362
PAXX, non-homologous end joining factor
Low tissue specificity
Detected in all
PBDC1
ENSSSCG00000030577
ENSG00000102390
Polysaccharide biosynthesis domain containing 1
Low tissue specificity
Detected in all
PBK
ENSSSCG00000009671
ENSG00000168078
Lymphokine-activated killer T-cell-originated protein kinase
Low tissue specificity
Detected in all
PBLD
ENSSSCG00000025876
ENSG00000108187
Phenazine biosynthesis like protein domain containing
Tissue enhanced
Detected in all
kidney:
44.8
liver:
66.2
PBRM1
ENSSSCG00000035824
ENSG00000163939
Polybromo 1
Low tissue specificity
Detected in all
PBX1
ENSSSCG00000006331
ENSG00000185630
PBX homeobox 1
Low tissue specificity
Detected in all
PBX2
ENSSSCG00000001438
ENSG00000204304
Pre-B-cell leukemia transcription factor 2
Low tissue specificity
Detected in all
PBX3
ENSSSCG00000005604
ENSG00000167081
PBX homeobox 3
Tissue enhanced
Detected in all
brain:
73.0
PBX4
ENSSSCG00000013933
ENSG00000105717
PBX homeobox 4
Tissue enhanced
Detected in many
testis:
41.1
PBXIP1
ENSSSCG00000006540
ENSG00000163346
PBX homeobox interacting protein 1
Low tissue specificity
Detected in all
PC
ENSSSCG00000012926
ENSG00000173599
Pyruvate carboxylase, mitochondrial
Tissue enriched
Detected in many
adipose tissue:
202.1
PCBD1
ENSSSCG00000010275
ENSG00000166228
Pterin-4-alpha-carbinolamine dehydratase
Tissue enhanced
Detected in all
liver:
105.1
PCBP1
ENSSSCG00000027224
ENSG00000169564
Poly(rC) binding protein 1
Low tissue specificity
Detected in all
PCBP2
ENSSSCG00000000274
ENSG00000197111
Poly(rC)-binding protein 2
Low tissue specificity
Detected in all
PCBP4
ENSSSCG00000028446
ENSG00000090097
Poly(rC) binding protein 4
Tissue enhanced
Detected in many
brain:
47.4
pineal gland:
60.2
retina:
87.1
vagus nerve:
53.4
PCCA
ENSSSCG00000009522
ENSG00000175198
Propionyl-CoA carboxylase alpha subunit
Tissue enhanced
Detected in all
liver:
61.5
PCCB
ENSSSCG00000011653
ENSG00000114054
Propionyl-CoA carboxylase beta chain, mitochondrial
Low tissue specificity
Detected in all
PCDH1
ENSSSCG00000022289
ENSG00000156453
Protocadherin 1
Low tissue specificity
Detected in many
PCDH12
ENSSSCG00000014395
ENSG00000113555
Protocadherin 12
Low tissue specificity
Detected in many
PCDH18
ENSSSCG00000032749
ENSG00000189184
Protocadherin 18
Low tissue specificity
Detected in many
PCDH19
ENSSSCG00000012479
ENSG00000165194
Protocadherin 19
Tissue enhanced
Detected in many
lens:
38.0
PCDHA1
ENSSSCG00000026471
ENSG00000204970
Protocadherin alpha 1
Low tissue specificity
Detected in all
PCDHA13
ENSSSCG00000028030
ENSG00000239389
Protocadherin alpha 13
Low tissue specificity
Detected in all
PCDHB6
ENSSSCG00000024873
ENSG00000113211
Protocadherin beta 6
Tissue enhanced
Detected in all
cartilage:
21.9
PCDHGA2
ENSSSCG00000031384
ENSG00000081853
Protocadherin gamma subfamily A, 2
Tissue enhanced
Detected in many
pituitary gland:
15.5
PCDHGA3
ENSSSCG00000033765
ENSG00000254245
Protocadherin gamma subfamily A, 3
Low tissue specificity
Detected in all
PCDHGA8
ENSSSCG00000021326
ENSG00000253767
Protocadherin gamma subfamily A, 8
Low tissue specificity
Detected in all
PCDHGA9
ENSSSCG00000032137
ENSG00000261934
Protocadherin gamma subfamily A, 9
Low tissue specificity
Detected in all
PCDHGB4
ENSSSCG00000024762
ENSG00000253953
Protocadherin gamma subfamily B, 4
Low tissue specificity
Detected in all
PCDHGB5
ENSSSCG00000023485
ENSG00000276547
Protocadherin gamma subfamily B, 5
Low tissue specificity
Detected in all
PCDHGB6
ENSSSCG00000031533
ENSG00000253305
Protocadherin gamma subfamily B, 6
Low tissue specificity
Detected in all
PCDHGB7
ENSSSCG00000023932
ENSG00000254122
Protocadherin gamma subfamily B, 7
Low tissue specificity
Detected in all
PCDHGC4
ENSSSCG00000027371
ENSG00000242419
Protocadherin gamma subfamily C, 4
Low tissue specificity
Detected in all
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