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UMAP gene cluster
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Keyword
Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14921 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NPR3
ENSSSCG00000036201
ENSG00000113389
Natriuretic peptide receptor 3
Tissue enhanced
Detected in many
choroid plexus:
21.9
cornea:
33.2
lens:
39.8
NPRL2
ENSSSCG00000011409
ENSG00000114388
NPR2 like, GATOR1 complex subunit
Low tissue specificity
Detected in all
NPRL3
ENSSSCG00000007981
ENSG00000103148
NPR3 like, GATOR1 complex subunit
Low tissue specificity
Detected in all
NPSR1
ENSSSCG00000016664
ENSG00000187258
Neuropeptide S receptor 1
Low tissue specificity
Detected in many
NPTN
ENSSSCG00000001918
ENSG00000156642
Neuroplastin
Low tissue specificity
Detected in all
NPY1R
ENSSSCG00000008888
ENSG00000164128
Neuropeptide Y receptor type 1
Tissue enhanced
Detected in all
choroid plexus:
27.1
ovary:
53.5
NPY2R
ENSSSCG00000008993
ENSG00000185149
Neuropeptide Y receptor type 2
Tissue enhanced
Detected in many
brain:
15.1
cervix:
37.5
NQO1
ENSSSCG00000002754
ENSG00000181019
NAD(P)H dehydrogenase
Tissue enhanced
Detected in many
cornea:
151.7
lens:
43.5
NQO2
ENSSSCG00000020758
ENSG00000124588
N-ribosyldihydronicotinamide:quinone reductase 2
Low tissue specificity
Detected in all
NR0B1
ENSSSCG00000012199
ENSG00000169297
Nuclear receptor subfamily 0 group B member 1
Group enriched
Detected in some
adrenal gland:
13.9
male glands:
12.3
pituitary gland:
4.0
testis:
3.6
NR0B2
ENSSSCG00000003565
ENSG00000131910
Nuclear receptor subfamily 0 group B member 2
Tissue enhanced
Detected in many
adrenal gland:
18.5
liver:
25.7
NR1D1
ENSSSCG00000036933
ENSG00000126368
Nuclear receptor subfamily 1 group D member 1
Low tissue specificity
Detected in all
NR1D2
ENSSSCG00000027017
ENSG00000174738
Nuclear receptor subfamily 1 group D member 2
Low tissue specificity
Detected in all
NR1H2
ENSSSCG00000003211
ENSG00000131408
Nuclear receptor subfamily 1 group H member 2
Low tissue specificity
Detected in all
NR1H3
ENSSSCG00000013241
ENSG00000025434
Oxysterols receptor LXR-alpha
Tissue enhanced
Detected in all
lymphoid tissue:
98.0
NR1H4
ENSSSCG00000000875
ENSG00000012504
Bile acid receptor
Tissue enhanced
Detected in some
adrenal gland:
22.5
liver:
68.0
small intestine:
44.1
thyroid gland:
35.6
NR1I2
ENSSSCG00000011890
ENSG00000144852
Nuclear receptor subfamily 1 group I member 2
Tissue enhanced
Detected in all
large intestine:
34.3
liver:
64.9
small intestine:
39.5
NR1I3
ENSSSCG00000006353
ENSG00000143257
Nuclear receptor subfamily 1 group I member 3
Tissue enriched
Detected in many
liver:
60.5
NR2C1
ENSSSCG00000000902
ENSG00000120798
Nuclear receptor subfamily 2 group C member 1
Low tissue specificity
Detected in all
NR2C2
ENSSSCG00000011594
ENSG00000177463
Nuclear receptor subfamily 2 group C member 2
Low tissue specificity
Detected in all
NR2C2AP
ENSSSCG00000023658
ENSG00000184162
Nuclear receptor 2C2 associated protein
Low tissue specificity
Detected in all
NR2F1
ENSSSCG00000014157
ENSG00000175745
Nuclear receptor subfamily 2 group F member 1
Low tissue specificity
Detected in many
NR2F2
ENSSSCG00000002254
ENSG00000185551
COUP transcription factor 2 isoform 2
Low tissue specificity
Detected in all
NR2F6
ENSSSCG00000013873
ENSG00000160113
Nuclear receptor subfamily 2 group F member 6
Tissue enhanced
Detected in all
stomach:
103.6
NR3C1
ENSSSCG00000014401
ENSG00000113580
Glucocorticoid receptor
Low tissue specificity
Detected in all
NR3C2
ENSSSCG00000037766
ENSG00000151623
Nuclear receptor subfamily 3 group C member 2
Low tissue specificity
Detected in all
NR4A1
ENSSSCG00000031321
ENSG00000123358
Nuclear receptor subfamily 4 group A member 1
Tissue enhanced
Detected in many
cartilage:
138.9
NR4A2
ENSSSCG00000015871
ENSG00000153234
Nuclear receptor subfamily 4 group A member 2
Tissue enhanced
Detected in many
cartilage:
110.4
male glands:
119.9
vagus nerve:
70.0
NR4A3
ENSSSCG00000005385
ENSG00000119508
Nuclear receptor subfamily 4 group A member 3
Tissue enhanced
Detected in many
heart:
83.4
male glands:
171.7
NR6A1
ENSSSCG00000005589
ENSG00000148200
Nuclear receptor subfamily 6 group A member 1
Tissue enhanced
Detected in all
testis:
33.8
NRAP
ENSSSCG00000010640
ENSG00000197893
Nebulin-related-anchoring protein
Group enriched
Detected in some
heart:
82.7
skeletal muscle:
143.0
NRARP
ENSSSCG00000005844
ENSG00000198435
NOTCH regulated ankyrin repeat protein
Tissue enhanced
Detected in all
testis:
90.1
urinary bladder:
83.9
NRAS
ENSSSCG00000032477
GTPase NRas
Low tissue specificity
Detected in all
NRBF2
ENSSSCG00000024081
ENSG00000148572
Nuclear receptor binding factor 2
Low tissue specificity
Detected in all
NRBP1
ENSSSCG00000022454
ENSG00000115216
Nuclear receptor-binding protein
Low tissue specificity
Detected in all
NRBP2
ENSSSCG00000038025
ENSG00000185189
Nuclear receptor binding protein 2
Tissue enhanced
Detected in all
skin:
71.1
vagus nerve:
80.9
NRDC
ENSSSCG00000003870
ENSG00000078618
Nardilysin convertase
Low tissue specificity
Detected in all
NRDE2
ENSSSCG00000002434
ENSG00000119720
NRDE-2, necessary for RNA interference, domain containing
Low tissue specificity
Detected in all
NRF1
ENSSSCG00000016566
ENSG00000106459
Nuclear respiratory factor 1
Low tissue specificity
Detected in all
NRG4
ENSSSCG00000001860
ENSG00000169752
Neuregulin 4
Tissue enhanced
Detected in many
brain:
66.0
male glands:
67.5
NRGN
ENSSSCG00000039322
ENSG00000154146
Neurogranin
Tissue enriched
Detected in many
brain:
320.1
NRIP1
ENSSSCG00000021038
ENSG00000180530
Nuclear receptor interacting protein 1
Tissue enhanced
Detected in all
cervix:
95.1
NRIP2
ENSSSCG00000000741
ENSG00000053702
Nuclear receptor interacting protein 2
Low tissue specificity
Detected in many
NRK
ENSSSCG00000012546
ENSG00000123572
Nik related kinase
Tissue enhanced
Detected in some
brain:
11.4
cartilage:
51.2
kidney:
16.0
NRM
ENSSSCG00000023639
ENSG00000137404
Nurim
Tissue enriched
Detected in many
testis:
74.2
NRN1
ENSSSCG00000026211
ENSG00000124785
Neuritin precursor
Group enriched
Detected in some
brain:
38.2
retina:
10.5
NRP1
ENSSSCG00000011102
ENSG00000099250
Neuropilin 1
Tissue enhanced
Detected in many
adrenal gland:
79.8
NRP2
ENSSSCG00000026383
ENSG00000118257
Neuropilin 2
Tissue enhanced
Detected in many
smooth muscle:
71.2
NRROS
ENSSSCG00000023527
ENSG00000174004
Negative regulator of reactive oxygen species
Tissue enhanced
Detected in many
lymphoid tissue:
25.6
NRSN1
ENSSSCG00000021696
ENSG00000152954
Neurensin 1
Tissue enriched
Detected in many
brain:
50.9
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