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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14921 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NRSN2
ENSSSCG00000031519
ENSG00000125841
Neurensin 2
Tissue enhanced
Detected in all
brain:
24.3
NRXN1
ENSSSCG00000008419
ENSG00000179915
Neurexin 1
Tissue enhanced
Detected in many
bone marrow:
25.5
brain:
62.7
pituitary gland:
24.4
NSD1
ENSSSCG00000014044
ENSG00000165671
Nuclear receptor binding SET domain protein 1
Low tissue specificity
Detected in all
NSD2
ENSSSCG00000008682
ENSG00000109685
Nuclear receptor binding SET domain protein 2
Low tissue specificity
Detected in all
NSD3
ENSSSCG00000015820
ENSG00000147548
Nuclear receptor binding SET domain protein 3
Low tissue specificity
Detected in all
NSDHL
ENSSSCG00000012758
ENSG00000147383
Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating
Tissue enhanced
Detected in all
testis:
52.1
NSF
ENSSSCG00000017316
ENSG00000073969
Vesicle-fusing ATPase
Group enriched
Detected in all
brain:
64.6
pineal gland:
31.4
pituitary gland:
17.8
retina:
24.6
NSFL1C
ENSSSCG00000007187
ENSG00000088833
NSFL1 cofactor p47
Tissue enriched
Detected in all
lens:
121.8
NSG1
ENSSSCG00000024892
ENSG00000168824
Neuronal vesicle trafficking associated 1
Tissue enhanced
Detected in many
brain:
56.3
pineal gland:
28.5
pituitary gland:
27.4
NSL1
ENSSSCG00000015593
ENSG00000117697
NSL1, MIS12 kinetochore complex component
Low tissue specificity
Detected in all
NSMAF
ENSSSCG00000006236
ENSG00000035681
Neutral sphingomyelinase activation associated factor
Low tissue specificity
Detected in all
NSMCE1
ENSSSCG00000036275
ENSG00000169189
NSE1 homolog, SMC5-SMC6 complex component
Low tissue specificity
Detected in all
NSMCE2
ENSSSCG00000037755
ENSG00000156831
NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase
Low tissue specificity
Detected in all
NSMCE4A
ENSSSCG00000010700
ENSG00000107672
NSE4 homolog A, SMC5-SMC6 complex component
Low tissue specificity
Detected in all
NSMF
ENSSSCG00000037880
ENSG00000165802
NMDA receptor synaptonuclear signaling and neuronal migration factor
Tissue enhanced
Detected in all
brain:
71.4
NSRP1
ENSSSCG00000017795
ENSG00000126653
Nuclear speckle splicing regulatory protein 1
Low tissue specificity
Detected in all
NSUN2
ENSSSCG00000017104
ENSG00000037474
NOP2/Sun RNA methyltransferase family member 2
Low tissue specificity
Detected in all
NSUN3
ENSSSCG00000027432
ENSG00000178694
NOP2/Sun RNA methyltransferase family member 3
Tissue enhanced
Detected in all
male glands:
24.8
NSUN4
ENSSSCG00000038280
ENSG00000117481
NOP2/Sun RNA methyltransferase family member 4
Tissue enriched
Detected in all
testis:
60.1
NSUN5
ENSSSCG00000007704
ENSG00000130305
NOP2/Sun RNA methyltransferase family member 5
Low tissue specificity
Detected in all
NT5C
ENSSSCG00000028210
ENSG00000125458
5', 3'-nucleotidase, cytosolic
Low tissue specificity
Detected in all
NT5C2
ENSSSCG00000010594
ENSG00000076685
5'-nucleotidase, cytosolic II
Low tissue specificity
Detected in all
NT5C3B
ENSSSCG00000034779
ENSG00000141698
5'-nucleotidase, cytosolic IIIB
Tissue enhanced
Detected in all
brain:
32.1
NT5DC1
ENSSSCG00000004435
ENSG00000178425
5'-nucleotidase domain containing 1
Tissue enhanced
Detected in all
large intestine:
34.0
pineal gland:
29.9
NT5DC2
ENSSSCG00000011444
ENSG00000168268
5'-nucleotidase domain containing 2
Tissue enriched
Detected in all
lens:
131.7
NT5DC3
ENSSSCG00000000853
ENSG00000111696
5'-nucleotidase domain containing 3
Tissue enhanced
Detected in many
brain:
42.7
NT5DC4
ENSSSCG00000008092
ENSG00000144130
5'-nucleotidase domain containing 4
Low tissue specificity
Detected in all
NT5E
ENSSSCG00000004291
ENSG00000135318
5'-nucleotidase ecto
Tissue enhanced
Detected in all
cartilage:
55.2
synovial tissue:
34.8
NTAN1
ENSSSCG00000037398
ENSG00000157045
Protein N-terminal asparagine amidohydrolase
Low tissue specificity
Detected in all
NTF3
ENSSSCG00000033544
ENSG00000185652
Neurotrophin 3
Low tissue specificity
Detected in all
NTHL1
ENSSSCG00000008039
ENSG00000065057
Nth like DNA glycosylase 1
Low tissue specificity
Detected in all
NTMT1
ENSSSCG00000005678
ENSG00000148335
N-terminal Xaa-Pro-Lys N-methyltransferase 1
Tissue enhanced
Detected in all
testis:
55.2
NTN1
ENSSSCG00000017993
ENSG00000065320
Netrin-1 precursor
Tissue enriched
Detected in many
cartilage:
142.9
NTN4
ENSSSCG00000000896
ENSG00000074527
Netrin 4
Tissue enhanced
Detected in many
cartilage:
59.6
penis:
30.7
NTN5
ENSSSCG00000003146
ENSG00000142233
Netrin 5
Tissue enhanced
Detected in many
male glands:
37.7
NTPCR
ENSSSCG00000010166
ENSG00000135778
Nucleoside-triphosphatase, cancer-related
Tissue enhanced
Detected in all
lens:
46.7
NTRK1
ENSSSCG00000006464
ENSG00000198400
Neurotrophic receptor tyrosine kinase 1
Tissue enriched
Detected in all
adrenal gland:
37.7
NUAK1
ENSSSCG00000032861
ENSG00000074590
NUAK family kinase 1
Low tissue specificity
Detected in all
NUAK2
ENSSSCG00000038471
ENSG00000163545
NUAK family kinase 2
Low tissue specificity
Detected in all
NUB1
ENSSSCG00000016438
ENSG00000013374
Negative regulator of ubiquitin like proteins 1
Low tissue specificity
Detected in all
NUBP1
ENSSSCG00000024488
ENSG00000103274
Cytosolic Fe-S cluster assembly factor NUBP1
Tissue enhanced
Detected in all
heart:
57.5
NUBP2
ENSSSCG00000008014
ENSG00000095906
Cytosolic Fe-S cluster assembly factor NUBP2
Low tissue specificity
Detected in all
NUBPL
ENSSSCG00000001968
ENSG00000151413
Nucleotide binding protein like
Low tissue specificity
Detected in all
NUCB1
ENSSSCG00000003150
ENSG00000104805
Nucleobindin-1 precursor
Low tissue specificity
Detected in all
NUCKS1
ENSSSCG00000022398
ENSG00000069275
Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1
Low tissue specificity
Detected in all
NUDC
ENSSSCG00000003566
ENSG00000090273
Nuclear migration protein nudC
Low tissue specificity
Detected in all
NUDCD1
ENSSSCG00000006029
ENSG00000120526
NudC domain containing 1
Low tissue specificity
Detected in all
NUDCD2
ENSSSCG00000032806
ENSG00000170584
NudC domain containing 2
Low tissue specificity
Detected in all
NUDCD3
ENSSSCG00000016747
ENSG00000015676
NudC domain containing 3
Low tissue specificity
Detected in all
NUDT1
ENSSSCG00000033926
ENSG00000106268
7,8-dihydro-8-oxoguanine triphosphatase
Low tissue specificity
Detected in all
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