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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
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7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14921 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NOL3
ENSSSCG00000040125
ENSG00000140939
Nucleolar protein 3
Tissue enhanced
Detected in many
lens:
31.6
skeletal muscle:
57.0
NOL4
ENSSSCG00000003737
ENSG00000101746
Nucleolar protein 4
Tissue enhanced
Detected in all
brain:
31.4
pituitary gland:
33.5
NOL4L
ENSSSCG00000007249
ENSG00000197183
Nucleolar protein 4 like
Low tissue specificity
Detected in all
NOL6
ENSSSCG00000010990
ENSG00000165271
Nucleolar protein 6
Low tissue specificity
Detected in all
NOL7
ENSSSCG00000040816
ENSG00000225921
Nucleolar protein 7
Low tissue specificity
Detected in all
NOL8
ENSSSCG00000008069
ENSG00000198000
Nucleolar protein 8
Low tissue specificity
Detected in all
NOL9
ENSSSCG00000030253
ENSG00000162408
Nucleolar protein 9
Low tissue specificity
Detected in all
NOLC1
ENSSSCG00000010576
ENSG00000166197
Nucleolar and coiled-body phosphoprotein 1
Low tissue specificity
Detected in all
NOM1
ENSSSCG00000016411
ENSG00000146909
Nucleolar protein with MIF4G domain 1
Low tissue specificity
Detected in all
NONO
ENSSSCG00000023245
ENSG00000147140
Non-POU domain containing octamer binding
Low tissue specificity
Detected in all
NOP10
ENSSSCG00000036960
ENSG00000182117
NOP10 ribonucleoprotein
Low tissue specificity
Detected in all
NOP14
ENSSSCG00000008693
ENSG00000087269
NOP14 nucleolar protein
Low tissue specificity
Detected in all
NOP2
ENSSSCG00000000696
ENSG00000111641
Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase
Tissue enhanced
Detected in all
epididymis:
67.1
NOP53
ENSSSCG00000022774
ENSG00000105373
NOP53 ribosome biogenesis factor
Low tissue specificity
Detected in all
NOP58
ENSSSCG00000022225
ENSG00000055044
NOP58 ribonucleoprotein
Low tissue specificity
Detected in all
NOP9
ENSSSCG00000001990
ENSG00000196943
NOP9 nucleolar protein
Low tissue specificity
Detected in all
NOS2
ENSSSCG00000017755
ENSG00000007171
Nitric oxide synthase, inducible
Tissue enhanced
Detected in many
cartilage:
34.7
large intestine:
42.1
NOS3
ENSSSCG00000016450
ENSG00000164867
Nitric oxide synthase, endothelial
Tissue enhanced
Detected in many
penis:
48.6
NOSIP
ENSSSCG00000029154
ENSG00000142546
Nitric oxide synthase interacting protein
Low tissue specificity
Detected in all
NOSTRIN
ENSSSCG00000015923
ENSG00000163072
Nitric oxide synthase trafficking
Low tissue specificity
Detected in many
NOTCH1
ENSSSCG00000038509
ENSG00000148400
Notch 1
Low tissue specificity
Detected in all
NOTCH2
ENSSSCG00000006709
ENSG00000134250
Notch 2
Low tissue specificity
Detected in all
NOTCH3
ENSSSCG00000025176
ENSG00000074181
Notch 3
Low tissue specificity
Detected in all
NOTCH4
ENSSSCG00000001440
ENSG00000204301
Neurogenic locus notch homolog protein 4 precursor
Low tissue specificity
Detected in many
NOTUM
ENSSSCG00000039013
ENSG00000185269
Notum, palmitoleoyl-protein carboxylesterase
Tissue enriched
Detected in many
liver:
58.8
NOV
ENSSSCG00000006002
ENSG00000136999
Nephroblastoma overexpressed
Tissue enhanced
Detected in many
dura mater:
78.5
penis:
103.9
NOVA1
ENSSSCG00000024396
ENSG00000139910
NOVA alternative splicing regulator 1
Tissue enhanced
Detected in many
brain:
35.0
synovial tissue:
21.8
NOVA2
ENSSSCG00000035029
ENSG00000104967
NOVA alternative splicing regulator 2
Tissue enhanced
Detected in many
brain:
25.8
NOX5
ENSSSCG00000004966
ENSG00000255346
NADPH oxidase 5
Tissue enhanced
Detected in many
mesothelial tissue:
18.5
urinary bladder:
24.4
NOXA1
ENSSSCG00000033685
ENSG00000188747
NADPH oxidase activator 1
Tissue enhanced
Detected in many
stomach:
32.2
NOXRED1
ENSSSCG00000030069
ENSG00000165555
NADP dependent oxidoreductase domain containing 1
Tissue enhanced
Detected in many
testis:
15.9
NPAS2
ENSSSCG00000008171
ENSG00000170485
Neuronal PAS domain protein 2
Low tissue specificity
Detected in all
NPAS4
ENSSSCG00000012942
ENSG00000174576
Neuronal PAS domain protein 4
Tissue enhanced
Detected in all
adrenal gland:
21.3
NPAT
ENSSSCG00000026959
ENSG00000149308
Nuclear protein, coactivator of histone transcription
Low tissue specificity
Detected in all
NPC1
ENSSSCG00000003707
ENSG00000141458
Niemann-Pick C1 protein precursor
Tissue enhanced
Detected in all
adrenal gland:
51.1
brain:
53.2
NPC1L1
ENSSSCG00000016746
ENSG00000015520
NPC1 like intracellular cholesterol transporter 1
Group enriched
Detected in all
gallbladder:
10.5
liver:
28.8
small intestine:
35.8
NPC2
ENSSSCG00000002366
ENSG00000119655
Epididymal secretory protein E1
Tissue enriched
Detected in many
epididymis:
615.2
NPDC1
ENSSSCG00000034566
ENSG00000107281
Neural proliferation, differentiation and control 1
Low tissue specificity
Detected in many
NPEPL1
ENSSSCG00000007517
ENSG00000215440
Probable aminopeptidase NPEPL1
Low tissue specificity
Detected in many
NPEPPS
ENSSSCG00000017513
ENSG00000141279
Aminopeptidase puromycin sensitive
Low tissue specificity
Detected in all
NPFF
ENSSSCG00000000277
ENSG00000139574
Neuropeptide FF-amide peptide precursor
Tissue enhanced
Detected in all
brain:
56.3
NPHP1
ENSSSCG00000008111
ENSG00000144061
Nephrocystin 1
Tissue enhanced
Detected in all
testis:
55.1
NPHP4
ENSSSCG00000029843
ENSG00000131697
Nephrocystin 4
Low tissue specificity
Detected in all
NPL
ENSSSCG00000022292
ENSG00000135838
N-acetylneuraminate lyase
Tissue enhanced
Detected in many
lymphoid tissue:
26.3
skin:
27.8
NPLOC4
ENSSSCG00000024235
ENSG00000182446
NPL4 homolog, ubiquitin recognition factor
Low tissue specificity
Detected in all
NPM1
ENSSSCG00000016998
ENSG00000181163
Nucleophosmin 1
Low tissue specificity
Detected in all
NPM3
ENSSSCG00000010568
ENSG00000107833
Nucleophosmin/nucleoplasmin 3
Low tissue specificity
Detected in all
NPNT
ENSSSCG00000038801
ENSG00000168743
Nephronectin
Tissue enhanced
Detected in many
cornea:
52.6
thyroid gland:
41.8
NPR1
ENSSSCG00000006572
ENSG00000169418
Natriuretic peptide receptor 1
Tissue enhanced
Detected in many
adipose tissue:
45.7
aorta:
28.4
mesothelial tissue:
26.9
NPR2
ENSSSCG00000005322
ENSG00000159899
Atrial natriuretic peptide receptor 2 precursor
Low tissue specificity
Detected in all
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