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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GOLPH3L
ENSSSCG00000038558
ENSG00000143457
Golgi phosphoprotein 3 like
Tissue enhanced
Detected in all
male glands:
91.6
GOLT1B
ENSSSCG00000000579
ENSG00000111711
Vesicle transport protein GOT1B
Low tissue specificity
Detected in all
GON7
ENSSSCG00000002459
ENSG00000170270
EKC/KEOPS complex subunit GON7
Low tissue specificity
Detected in all
GORAB
ENSSSCG00000006280
ENSG00000120370
Golgin, RAB6 interacting
Tissue enhanced
Detected in all
male glands:
78.3
GORASP1
ENSSSCG00000034916
ENSG00000114745
Golgi reassembly stacking protein 1
Low tissue specificity
Detected in all
GORASP2
ENSSSCG00000015943
ENSG00000115806
Golgi reassembly stacking protein 2
Low tissue specificity
Detected in all
GOSR1
ENSSSCG00000029262
ENSG00000108587
Golgi SNAP receptor complex member 1
Low tissue specificity
Detected in all
GOT1
ENSSSCG00000010537
ENSG00000120053
Aspartate aminotransferase, cytoplasmic
Tissue enhanced
Detected in all
heart:
69.7
skeletal muscle:
62.1
GOT2
ENSSSCG00000032985
ENSG00000125166
Aspartate aminotransferase, mitochondrial
Low tissue specificity
Detected in all
GP1BA
ENSSSCG00000017908
ENSG00000185245
Glycoprotein Ib platelet alpha subunit
Tissue enhanced
Detected in some
epididymis:
9.6
fallopian tube:
11.7
thyroid gland:
37.5
GP2
ENSSSCG00000007861
ENSG00000169347
Glycoprotein 2
Low tissue specificity
Detected in all
GP9
ENSSSCG00000031176
ENSG00000169704
Platelet glycoprotein IX precursor
Low tissue specificity
Detected in many
GP91-PHOX
ENSSSCG00000012229
ENSG00000165168
Cytochrome b-245 heavy chain precursor
Tissue enhanced
Detected in many
lung:
31.0
lymphoid tissue:
49.0
synovial tissue:
37.3
GPAA1
ENSSSCG00000005912
ENSG00000197858
Glycosylphosphatidylinositol anchor attachment 1
Low tissue specificity
Detected in all
GPALPP1
ENSSSCG00000009419
ENSG00000133114
GPALPP motifs containing 1
Low tissue specificity
Detected in all
GPAM
ENSSSCG00000010631
ENSG00000119927
Glycerol-3-phosphate acyltransferase, mitochondrial
Tissue enhanced
Detected in all
epididymis:
107.2
liver:
36.7
GPANK1
ENSSSCG00000001413
ENSG00000204438
G patch domain and ankyrin repeat-containing protein 1
Low tissue specificity
Detected in all
GPAT4
ENSSSCG00000007019
ENSG00000158669
Glycerol-3-phosphate acyltransferase 6
Low tissue specificity
Detected in all
GPATCH1
ENSSSCG00000002865
ENSG00000076650
G-patch domain containing 1
Low tissue specificity
Detected in all
GPATCH11
ENSSSCG00000008497
ENSG00000152133
G-patch domain containing 11
Low tissue specificity
Detected in all
GPATCH2
ENSSSCG00000027207
ENSG00000092978
G-patch domain containing 2
Low tissue specificity
Detected in all
GPATCH2L
ENSSSCG00000002387
ENSG00000089916
G patch domain-containing protein 2-like
Low tissue specificity
Detected in all
GPATCH3
ENSSSCG00000003564
ENSG00000198746
G-patch domain containing 3
Low tissue specificity
Detected in all
GPATCH4
ENSSSCG00000006481
ENSG00000160818
G patch domain-containing protein 4
Low tissue specificity
Detected in all
GPBP1
ENSSSCG00000016922
ENSG00000062194
GC-rich promoter binding protein 1
Low tissue specificity
Detected in all
GPC1
ENSSSCG00000016364
ENSG00000063660
Glypican 1
Low tissue specificity
Detected in all
GPC2
ENSSSCG00000007649
ENSG00000213420
Glypican 2
Tissue enhanced
Detected in many
retina:
12.4
testis:
32.2
GPC4
ENSSSCG00000012679
ENSG00000076716
Glypican 4
Tissue enhanced
Detected in many
ovary:
45.2
GPC5
ENSSSCG00000031946
ENSG00000179399
Glypican 5
Tissue enriched
Detected in many
brain:
18.5
GPCPD1
ENSSSCG00000007043
ENSG00000125772
Glycerophosphocholine phosphodiesterase 1
Tissue enhanced
Detected in all
thyroid gland:
57.9
GPD1
ENSSSCG00000000214
ENSG00000167588
Glycerol-3-phosphate dehydrogenase
Tissue enhanced
Detected in all
adipose tissue:
55.9
skeletal muscle:
142.5
GPD1L
ENSSSCG00000021977
ENSG00000152642
Glycerol-3-phosphate dehydrogenase 1 like
Tissue enhanced
Detected in all
male glands:
70.5
GPD2
ENSSSCG00000015872
ENSG00000115159
Glycerol-3-phosphate dehydrogenase 2
Tissue enhanced
Detected in many
brain:
30.8
GPHN
ENSSSCG00000002285
ENSG00000171723
Gephyrin
Low tissue specificity
Detected in all
GPI
ENSSSCG00000002873
ENSG00000105220
Glucose-6-phosphate isomerase
Tissue enhanced
Detected in all
lens:
152.2
skeletal muscle:
130.5
GPKOW
ENSSSCG00000012291
ENSG00000068394
G-patch domain and KOW motifs
Low tissue specificity
Detected in all
GPLD1
ENSSSCG00000001089
ENSG00000112293
Glycosylphosphatidylinositol specific phospholipase D1
Tissue enhanced
Detected in many
liver:
45.1
lung:
26.3
GPN1
ENSSSCG00000008546
ENSG00000198522
GPN-loop GTPase 1
Low tissue specificity
Detected in all
GPN3
ENSSSCG00000009820
ENSG00000111231
GPN-loop GTPase 3
Low tissue specificity
Detected in all
GPNMB
ENSSSCG00000032241
ENSG00000136235
Transmembrane glycoprotein NMB precursor
Tissue enhanced
Detected in many
cervix:
50.5
lung:
48.5
ovary:
64.0
GPR1
ENSSSCG00000016129
ENSG00000183671
G-protein coupled receptor 1
Tissue enriched
Detected in all
synovial tissue:
71.3
GPR107
ENSSSCG00000038868
ENSG00000148358
G protein-coupled receptor 107
Low tissue specificity
Detected in all
GPR108
ENSSSCG00000013552
ENSG00000125734
G protein-coupled receptor 108
Low tissue specificity
Detected in all
GPR119
ENSSSCG00000012661
ENSG00000147262
Glucose-dependent insulinotropic receptor
Low tissue specificity
Detected in many
GPR132
ENSSSCG00000036892
ENSG00000183484
G protein-coupled receptor 132
Tissue enhanced
Detected in many
lymphoid tissue:
17.2
stomach:
13.0
GPR135
ENSSSCG00000032928
ENSG00000181619
G protein-coupled receptor 135
Tissue enriched
Detected in many
testis:
37.1
GPR137
ENSSSCG00000013032
ENSG00000173264
G protein-coupled receptor 137
Low tissue specificity
Detected in all
GPR137B
ENSSSCG00000038853
ENSG00000077585
G protein-coupled receptor 137B
Tissue enhanced
Detected in all
lens:
81.7
GPR137C
ENSSSCG00000005036
ENSG00000180998
G protein-coupled receptor 137C
Tissue enhanced
Detected in many
brain:
26.3
heart:
14.8
retina:
19.6
GPR141
ENSSSCG00000016655
ENSG00000187037
G protein-coupled receptor 141
Low tissue specificity
Detected in all
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