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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GMFG
ENSSSCG00000040981
ENSG00000130755
Glia maturation factor gamma
Tissue enhanced
Detected in many
lymphoid tissue:
75.4
GMIP
ENSSSCG00000013931
ENSG00000089639
GEM interacting protein
Tissue enhanced
Detected in many
lymphoid tissue:
28.2
stomach:
33.9
GMNC
ENSSSCG00000024420
ENSG00000205835
Geminin coiled-coil domain containing
Tissue enhanced
Detected in many
choroid plexus:
27.0
GMNN
ENSSSCG00000001095
ENSG00000112312
Geminin, DNA replication inhibitor
Low tissue specificity
Detected in all
GMPPA
ENSSSCG00000023935
ENSG00000144591
Mannose-1-phosphate guanyltransferase alpha
Low tissue specificity
Detected in all
GMPR
ENSSSCG00000001064
ENSG00000137198
Guanosine monophosphate reductase
Tissue enhanced
Detected in all
heart:
44.1
skeletal muscle:
71.7
GMPR2
ENSSSCG00000026947
ENSG00000100938
Guanosine monophosphate reductase 2
Low tissue specificity
Detected in all
GMPS
ENSSSCG00000028855
ENSG00000163655
Guanine monophosphate synthase
Low tissue specificity
Detected in all
GNA11
ENSSSCG00000029279
ENSG00000088256
Guanine nucleotide-binding protein subunit alpha-11
Low tissue specificity
Detected in all
GNA12
ENSSSCG00000032549
ENSG00000146535
G protein subunit alpha 12
Low tissue specificity
Detected in all
GNA13
ENSSSCG00000039336
ENSG00000120063
G protein subunit alpha 13
Low tissue specificity
Detected in all
GNA14
ENSSSCG00000005284
ENSG00000156049
Guanine nucleotide-binding protein subunit alpha-14
Low tissue specificity
Detected in many
GNA15
ENSSSCG00000013473
ENSG00000060558
G protein subunit alpha 15
Tissue enhanced
Detected in many
lymphoid tissue:
24.2
GNAI2
ENSSSCG00000011399
ENSG00000114353
Guanine nucleotide-binding protein G(i) subunit alpha-2
Tissue enriched
Detected in all
retina:
275.2
GNAI3
ENSSSCG00000006824
ENSG00000065135
Guanine nucleotide-binding protein G(k) subunit alpha
Low tissue specificity
Detected in all
GNAO1
ENSSSCG00000034192
ENSG00000087258
G protein subunit alpha o1
Tissue enhanced
Detected in many
brain:
62.7
retina:
26.2
GNAQ
ENSSSCG00000033763
ENSG00000156052
Guanine nucleotide-binding protein G(q) subunit alpha
Low tissue specificity
Detected in all
GNAS
ENSSSCG00000007520
ENSG00000087460
Guanine nucleotide-binding protein G(s) subunit alpha isoform f
Low tissue specificity
Detected in all
GNAT2
ENSSSCG00000006823
ENSG00000134183
G protein subunit alpha transducin 2
Tissue enriched
Detected in all
retina:
68.6
GNB1
ENSSSCG00000021890
ENSG00000078369
G protein subunit beta 1
Tissue enhanced
Detected in all
retina:
163.4
GNB1L
ENSSSCG00000010130
ENSG00000185838
Guanine nucleotide-binding protein subunit beta-like protein 1
Low tissue specificity
Detected in all
GNB2
ENSSSCG00000007669
ENSG00000172354
G protein subunit beta 2
Low tissue specificity
Detected in all
GNB4
ENSSSCG00000037583
ENSG00000114450
G protein subunit beta 4
Low tissue specificity
Detected in many
GNB5
ENSSSCG00000004622
ENSG00000069966
G protein subunit beta 5
Tissue enhanced
Detected in all
brain:
30.7
pineal gland:
42.1
retina:
49.7
GNE
ENSSSCG00000037468
ENSG00000159921
Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase
Tissue enriched
Detected in all
male glands:
122.3
GNG10
ENSSSCG00000037964
ENSG00000242616
G protein subunit gamma 10
Low tissue specificity
Detected in all
GNG11
ENSSSCG00000015324
ENSG00000127920
G protein subunit gamma 11
Low tissue specificity
Detected in many
GNG14
ENSSSCG00000013724
ENSG00000283980
G protein subunit gamma 14
Tissue enhanced
Detected in many
epididymis:
16.3
GNG7
ENSSSCG00000033949
ENSG00000176533
G protein subunit gamma 7
Tissue enriched
Detected in all
brain:
110.7
GNG8
ENSSSCG00000022068
ENSG00000167414
G protein subunit gamma 8
Tissue enhanced
Detected in many
brain:
65.1
GNL1
ENSSSCG00000001372
ENSG00000204590
Guanine nucleotide-binding protein-like 1
Low tissue specificity
Detected in all
GNL2
ENSSSCG00000031631
ENSG00000134697
G protein nucleolar 2
Low tissue specificity
Detected in all
GNL3
ENSSSCG00000011449
ENSG00000163938
G protein nucleolar 3
Low tissue specificity
Detected in all
GNL3L
ENSSSCG00000012336
ENSG00000130119
G protein nucleolar 3 like
Tissue enriched
Detected in all
lens:
61.7
GNLY
ENSSSCG00000008228
ENSG00000115523
Antimicrobial peptide NK-lysin precursor
Low tissue specificity
Detected in all
GNMT
ENSSSCG00000033214
ENSG00000124713
Glycine N-methyltransferase
Tissue enriched
Detected in many
liver:
57.7
GNPAT
ENSSSCG00000010175
ENSG00000116906
Dihydroxyacetone phosphate acyltransferase
Low tissue specificity
Detected in all
GNPDA1
ENSSSCG00000038940
ENSG00000113552
Glucosamine-6-phosphate isomerase 1
Low tissue specificity
Detected in all
GNPDA2
ENSSSCG00000008808
ENSG00000163281
Glucosamine-6-phosphate deaminase 2
Low tissue specificity
Detected in all
GNPTAB
ENSSSCG00000000862
ENSG00000111670
N-acetylglucosamine-1-phosphate transferase alpha and beta subunits
Low tissue specificity
Detected in all
GNPTG
ENSSSCG00000008031
ENSG00000090581
N-acetylglucosamine-1-phosphate transferase gamma subunit
Low tissue specificity
Detected in all
GNS
ENSSSCG00000023715
ENSG00000135677
Glucosamine (N-acetyl)-6-sulfatase
Low tissue specificity
Detected in all
GOLGA1
ENSSSCG00000005597
ENSG00000136935
Golgin A1
Low tissue specificity
Detected in all
GOLGA3
ENSSSCG00000009733
ENSG00000090615
Golgin A3
Low tissue specificity
Detected in all
GOLGA4
ENSSSCG00000011243
ENSG00000144674
Golgin A4
Low tissue specificity
Detected in all
GOLGA5
ENSSSCG00000002455
ENSG00000066455
Golgin A5
Tissue enhanced
Detected in all
male glands:
64.2
GOLGA7
ENSSSCG00000020715
ENSG00000147533
Golgin A7
Tissue enriched
Detected in all
brain:
83.6
GOLGB1
ENSSSCG00000011882
ENSG00000173230
Golgin B1
Low tissue specificity
Detected in all
GOLIM4
ENSSSCG00000011741
ENSG00000173905
Golgi integral membrane protein 4
Low tissue specificity
Detected in all
GOLM1
ENSSSCG00000010955
ENSG00000135052
Golgi membrane protein 1
Tissue enhanced
Detected in all
small intestine:
76.5
stomach:
88.5
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