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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
13
14
15
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RBM11
ENSSSCG00000037517
ENSG00000185272
RNA binding motif protein 11
Tissue enhanced
Detected in some
brain:
10.0
epididymis:
5.8
pineal gland:
7.7
pituitary gland:
6.0
RBM12
ENSSSCG00000036156
ENSG00000244462
RNA binding motif protein 12
Low tissue specificity
Detected in all
RBM12B
ENSSSCG00000006110
ENSG00000183808
RNA binding motif protein 12B
Low tissue specificity
Detected in all
RBM14
ENSSSCG00000038008
ENSG00000239306
RNA-binding protein 14
Low tissue specificity
Detected in all
RBM15
ENSSSCG00000006809
ENSG00000162775
RNA binding motif protein 15
Low tissue specificity
Detected in all
RBM15B
ENSSSCG00000011420
ENSG00000259956
RNA binding motif protein 15B
Low tissue specificity
Detected in all
RBM17
ENSSSCG00000011134
ENSG00000134453
RNA binding motif protein 17
Low tissue specificity
Detected in all
RBM18
ENSSSCG00000030089
ENSG00000119446
RNA binding motif protein 18
Low tissue specificity
Detected in all
RBM19
ENSSSCG00000009868
ENSG00000122965
RNA binding motif protein 19
Low tissue specificity
Detected in all
RBM22
ENSSSCG00000023231
ENSG00000086589
RNA binding motif protein 22
Low tissue specificity
Detected in all
RBM23
ENSSSCG00000026700
ENSG00000100461
RNA binding motif protein 23
Low tissue specificity
Detected in all
RBM24
ENSSSCG00000038455
ENSG00000112183
RNA binding motif protein 24
Tissue enhanced
Detected in many
heart:
48.1
lens:
39.2
skeletal muscle:
94.7
RBM26
ENSSSCG00000009479
ENSG00000139746
RNA binding motif protein 26
Low tissue specificity
Detected in all
RBM28
ENSSSCG00000031847
ENSG00000106344
RNA binding motif protein 28
Low tissue specificity
Detected in all
RBM33
ENSSSCG00000016417
ENSG00000184863
RNA binding motif protein 33
Low tissue specificity
Detected in all
RBM38
ENSSSCG00000007504
ENSG00000132819
RNA-binding protein 38
Tissue enhanced
Detected in many
lens:
142.6
skeletal muscle:
42.7
RBM39
ENSSSCG00000007309
ENSG00000131051
RNA binding motif protein 39
Low tissue specificity
Detected in all
RBM4
ENSSSCG00000032437
ENSG00000173933
RNA-binding protein 4
Low tissue specificity
Detected in all
RBM41
ENSSSCG00000012556
ENSG00000089682
RNA binding motif protein 41
Low tissue specificity
Detected in all
RBM42
ENSSSCG00000002905
ENSG00000126254
RNA binding motif protein 42
Low tissue specificity
Detected in all
RBM45
ENSSSCG00000015996
ENSG00000155636
RNA binding motif protein 45
Low tissue specificity
Detected in all
RBM46
ENSSSCG00000008994
ENSG00000151962
RNA binding motif protein 46
Tissue enhanced
Detected in all
testis:
42.8
RBM47
ENSSSCG00000008796
ENSG00000163694
RNA binding motif protein 47
Low tissue specificity
Detected in many
RBM48
ENSSSCG00000015315
ENSG00000127993
RNA binding motif protein 48
Low tissue specificity
Detected in all
RBM4B
ENSSSCG00000038304
ENSG00000173914
RNA-binding protein 4B
Low tissue specificity
Detected in all
RBM5
ENSSSCG00000011395
ENSG00000003756
RNA binding motif protein 5
Low tissue specificity
Detected in all
RBM6
ENSSSCG00000011394
ENSG00000004534
RNA binding motif protein 6
Low tissue specificity
Detected in all
RBM8A
ENSSSCG00000028509
ENSG00000265241
RNA binding motif protein 8A
Low tissue specificity
Detected in all
RBMS1
ENSSSCG00000015888
ENSG00000153250
RNA binding motif single stranded interacting protein 1
Low tissue specificity
Detected in all
RBMS2
ENSSSCG00000000402
ENSG00000076067
RNA binding motif single stranded interacting protein 2
Low tissue specificity
Detected in all
RBMS3
ENSSSCG00000036381
ENSG00000144642
RNA binding motif single stranded interacting protein 3
Low tissue specificity
Detected in many
RBMX
ENSSSCG00000012703
ENSG00000147274
RNA-binding motif protein, X chromosome
Low tissue specificity
Detected in all
RBMX2
ENSSSCG00000032739
ENSG00000134597
RNA-binding motif protein, X-linked 2
Low tissue specificity
Detected in all
RBP1
ENSSSCG00000011664
ENSG00000114115
Retinol-binding protein 1
Tissue enhanced
Detected in many
choroid plexus:
50.2
cornea:
58.8
RBP4
ENSSSCG00000010479
ENSG00000138207
Retinol-binding protein 4 precursor
Group enriched
Detected in all
liver:
245.2
pineal gland:
94.9
RBP5
ENSSSCG00000039512
ENSG00000139194
Retinol-binding protein 5
Group enriched
Detected in all
kidney:
79.5
liver:
41.6
RBPJ
ENSSSCG00000022155
ENSG00000168214
Recombination signal binding protein for immunoglobulin kappa J region
Low tissue specificity
Detected in all
RBPMS
ENSSSCG00000015846
ENSG00000157110
RNA binding protein, mRNA processing factor
Tissue enhanced
Detected in many
smooth muscle:
125.5
RBPMS2
ENSSSCG00000004549
ENSG00000166831
RNA binding protein, mRNA processing factor 2
Tissue enhanced
Detected in many
smooth muscle:
91.8
urinary bladder:
45.2
RBX1
ENSSSCG00000034230
ENSG00000100387
Ring-box 1
Tissue enhanced
Detected in all
brain:
57.6
RC3H1
ENSSSCG00000015498
ENSG00000135870
Ring finger and CCCH-type domains 1
Low tissue specificity
Detected in all
RC3H2
ENSSSCG00000005575
ENSG00000056586
Ring finger and CCCH-type domains 2
Low tissue specificity
Detected in all
RCAN1
ENSSSCG00000012050
ENSG00000159200
Calcipressin-1
Tissue enhanced
Detected in all
cartilage:
90.9
RCAN2
ENSSSCG00000001716
ENSG00000172348
Regulator of calcineurin 2
Tissue enriched
Detected in many
lens:
184.3
RCAN3
ENSSSCG00000024818
ENSG00000117602
RCAN family member 3
Tissue enhanced
Detected in all
large intestine:
50.8
RCBTB1
ENSSSCG00000021060
ENSG00000136144
RCC1 and BTB domain containing protein 1
Tissue enhanced
Detected in all
male glands:
55.0
RCBTB2
ENSSSCG00000009400
ENSG00000136161
RCC1 and BTB domain containing protein 2
Low tissue specificity
Detected in all
RCC1
ENSSSCG00000029097
ENSG00000180198
Regulator of chromosome condensation 1
Tissue enhanced
Detected in all
testis:
55.4
RCC1L
ENSSSCG00000007723
ENSG00000274523
RCC1 like
Low tissue specificity
Detected in all
RCCD1
ENSSSCG00000001822
ENSG00000166965
RCC1 domain containing 1
Low tissue specificity
Detected in all
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