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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RCE1
ENSSSCG00000012927
ENSG00000173653
Ras converting CAAX endopeptidase 1
Low tissue specificity
Detected in all
RCHY1
ENSSSCG00000008969
ENSG00000163743
RING finger and CHY zinc finger domain-containing protein 1
Low tissue specificity
Detected in all
RCL1
ENSSSCG00000005217
ENSG00000120158
RNA terminal phosphate cyclase like 1
Tissue enriched
Detected in all
liver:
83.3
RCN2
ENSSSCG00000001866
ENSG00000117906
Reticulocalbin-2 precursor
Low tissue specificity
Detected in all
RCN3
ENSSSCG00000024823
ENSG00000142552
Reticulocalbin 3
Tissue enhanced
Detected in many
cartilage:
90.5
RCOR1
ENSSSCG00000002526
ENSG00000089902
REST corepressor 1
Low tissue specificity
Detected in all
RCOR2
ENSSSCG00000013049
ENSG00000167771
REST corepressor 2
Tissue enhanced
Detected in many
cartilage:
37.3
RCOR3
ENSSSCG00000028293
ENSG00000117625
REST corepressor 3
Low tissue specificity
Detected in all
RCSD1
ENSSSCG00000006307
ENSG00000198771
CapZ-interacting protein
Tissue enhanced
Detected in many
lymphoid tissue:
43.6
RD3
ENSSSCG00000035369
ENSG00000198570
Retinal degeneration 3
Tissue enriched
Detected in all
retina:
54.1
RD3L
ENSSSCG00000033990
ENSG00000227729
Retinal degeneration 3-like
Low tissue specificity
Detected in all
RDH10
ENSSSCG00000033669
ENSG00000121039
Retinol dehydrogenase 10
Tissue enhanced
Detected in all
thyroid gland:
44.3
RDH11
ENSSSCG00000002296
ENSG00000072042
Retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
Tissue enhanced
Detected in all
adrenal gland:
57.8
ovary:
62.2
testis:
122.1
RDH13
ENSSSCG00000038287
ENSG00000160439
Retinol dehydrogenase 13
Low tissue specificity
Detected in all
RDH14
ENSSSCG00000008608
ENSG00000240857
Retinol dehydrogenase 14
Tissue enhanced
Detected in all
lens:
31.7
RDH5
ENSSSCG00000000362
ENSG00000135437
Retinol dehydrogenase 5
Tissue enhanced
Detected in many
adipose tissue:
26.7
aorta:
30.2
brain:
23.6
choroid plexus:
16.3
RDX
ENSSSCG00000015013
ENSG00000137710
Radixin
Low tissue specificity
Detected in all
REC114
ENSSSCG00000039508
ENSG00000183324
REC114 meiotic recombination protein
Low tissue specificity
Detected in all
REC8
ENSSSCG00000002001
ENSG00000100918
REC8 meiotic recombination protein
Low tissue specificity
Detected in many
RECK
ENSSSCG00000005338
ENSG00000122707
Reversion inducing cysteine rich protein with kazal motifs
Low tissue specificity
Detected in all
RECQL
ENSSSCG00000000580
ENSG00000004700
ATP-dependent DNA helicase Q1
Low tissue specificity
Detected in all
RECQL4
ENSSSCG00000025736
ENSG00000160957
RecQ like helicase 4
Low tissue specificity
Detected in all
RECQL5
ENSSSCG00000023978
ENSG00000108469
RecQ like helicase 5
Low tissue specificity
Detected in all
REEP1
ENSSSCG00000023710
ENSG00000068615
Receptor accessory protein 1
Tissue enhanced
Detected in many
brain:
26.5
lens:
63.7
REEP2
ENSSSCG00000014335
ENSG00000132563
Receptor accessory protein 2
Tissue enhanced
Detected in all
lens:
152.3
testis:
49.9
REEP3
ENSSSCG00000036476
ENSG00000165476
Receptor accessory protein 3
Tissue enhanced
Detected in all
brain:
69.5
REEP4
ENSSSCG00000009617
ENSG00000168476
Receptor accessory protein 4
Low tissue specificity
Detected in all
REEP5
ENSSSCG00000022048
ENSG00000129625
Receptor accessory protein 5
Tissue enhanced
Detected in all
male glands:
120.6
REEP6
ENSSSCG00000026387
ENSG00000115255
Receptor accessory protein 6
Tissue enhanced
Detected in many
retina:
114.8
testis:
56.8
REG4
ENSSSCG00000040947
ENSG00000134193
Regenerating islet-derived protein 4 precursor
Tissue enriched
Detected in many
large intestine:
72.2
REL
ENSSSCG00000008388
ENSG00000162924
REL proto-oncogene, NF-kB subunit
Low tissue specificity
Detected in all
RELA
ENSSSCG00000012981
ENSG00000173039
Transcription factor p65
Low tissue specificity
Detected in all
RELL1
ENSSSCG00000008772
ENSG00000181826
RELT like 1
Tissue enhanced
Detected in all
male glands:
82.5
RELN
ENSSSCG00000015426
ENSG00000189056
Reelin
Group enriched
Detected in many
brain:
60.5
vagus nerve:
49.0
REM1
ENSSSCG00000028529
ENSG00000088320
RRAD and GEM like GTPase 1
Low tissue specificity
Detected in many
REM2
ENSSSCG00000031874
ENSG00000139890
RRAD and GEM like GTPase 2
Low tissue specificity
Detected in all
REN
ENSSSCG00000031235
ENSG00000143839
Renin
Low tissue specificity
Detected in all
RENBP
ENSSSCG00000012792
ENSG00000102032
N-acylglucosamine 2-epimerase
Tissue enhanced
Detected in all
kidney:
50.4
REPIN1
ENSSSCG00000033708
ENSG00000214022
Replication initiator 1
Low tissue specificity
Detected in all
REPS1
ENSSSCG00000004146
ENSG00000135597
RALBP1 associated Eps domain containing 1
Low tissue specificity
Detected in all
REPS2
ENSSSCG00000012150
ENSG00000169891
RALBP1 associated Eps domain containing 2
Tissue enhanced
Detected in many
brain:
30.8
RER1
ENSSSCG00000026626
ENSG00000157916
Retention in endoplasmic reticulum sorting receptor 1
Low tissue specificity
Detected in all
RERE
ENSSSCG00000033497
ENSG00000142599
Arginine-glutamic acid dipeptide repeats
Low tissue specificity
Detected in all
REST
ENSSSCG00000023357
ENSG00000084093
RE1 silencing transcription factor
Low tissue specificity
Detected in all
RETREG1
ENSSSCG00000016792
ENSG00000154153
Reticulophagy regulator 1
Low tissue specificity
Detected in all
RETREG2
ENSSSCG00000016207
ENSG00000144567
Reticulophagy regulator family member 2
Low tissue specificity
Detected in all
RETREG3
ENSSSCG00000017395
ENSG00000141699
Reticulophagy regulator family member 3
Low tissue specificity
Detected in all
RETSAT
ENSSSCG00000008237
ENSG00000042445
Retinol saturase
Tissue enhanced
Detected in all
adipose tissue:
86.0
REV1
ENSSSCG00000008179
ENSG00000135945
REV1, DNA directed polymerase
Low tissue specificity
Detected in all
REV3L
ENSSSCG00000025703
ENSG00000009413
REV3 like, DNA directed polymerase zeta catalytic subunit
Low tissue specificity
Detected in all
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