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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RARA
ENSSSCG00000017475
ENSG00000131759
Retinoic acid receptor alpha
Low tissue specificity
Detected in all
RARB
ENSSSCG00000011212
ENSG00000077092
Retinoic acid receptor beta
Low tissue specificity
Detected in all
RARG
ENSSSCG00000000258
ENSG00000172819
Retinoic acid receptor gamma
Tissue enhanced
Detected in all
cartilage:
78.2
RARRES1
ENSSSCG00000028623
ENSG00000118849
Retinoic acid receptor responder 1
Tissue enhanced
Detected in all
ovary:
73.5
RARRES2
ENSSSCG00000035419
ENSG00000106538
Retinoic acid receptor responder protein 2 precursor
Tissue enhanced
Detected in all
kidney:
123.4
liver:
125.8
RARS
ENSSSCG00000017015
ENSG00000113643
Arginine--tRNA ligase, cytoplasmic
Low tissue specificity
Detected in all
RARS2
ENSSSCG00000004303
ENSG00000146282
Arginyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
RASA1
ENSSSCG00000014146
ENSG00000145715
RAS p21 protein activator 1
Low tissue specificity
Detected in all
RASA2
ENSSSCG00000011672
ENSG00000155903
RAS p21 protein activator 2
Low tissue specificity
Detected in all
RASA3
ENSSSCG00000009567
ENSG00000185989
RAS p21 protein activator 3
Low tissue specificity
Detected in all
RASAL1
ENSSSCG00000009874
ENSG00000111344
RAS protein activator like 1
Tissue enhanced
Detected in many
adrenal gland:
30.1
salivary gland:
46.4
RASAL2
ENSSSCG00000015519
ENSG00000075391
RAS protein activator like 2
Low tissue specificity
Detected in all
RASD1
ENSSSCG00000034044
ENSG00000108551
Ras related dexamethasone induced 1
Tissue enhanced
Detected in all
epididymis:
28.4
male glands:
47.4
RASEF
ENSSSCG00000040707
ENSG00000165105
RAS and EF-hand domain containing
Tissue enhanced
Detected in many
male glands:
54.7
salivary gland:
27.2
stomach:
53.9
RASGEF1A
ENSSSCG00000010201
ENSG00000198915
RasGEF domain family member 1A
Group enriched
Detected in all
brain:
22.9
vagus nerve:
14.0
RASGEF1B
ENSSSCG00000029507
ENSG00000138670
Ras-GEF domain-containing family member 1B
Low tissue specificity
Detected in all
RASGRF1
ENSSSCG00000001771
ENSG00000058335
Ras protein specific guanine nucleotide releasing factor 1
Tissue enhanced
Detected in some
brain:
27.0
cornea:
52.3
pineal gland:
12.7
RASGRF2
ENSSSCG00000014127
ENSG00000113319
Ras protein specific guanine nucleotide releasing factor 2
Tissue enhanced
Detected in many
brain:
46.6
RASGRP1
ENSSSCG00000004791
ENSG00000172575
RAS guanyl releasing protein 1
Tissue enhanced
Detected in many
brain:
41.1
lymphoid tissue:
37.1
RASGRP3
ENSSSCG00000008509
ENSG00000152689
RAS guanyl releasing protein 3
Tissue enhanced
Detected in all
lymphoid tissue:
48.3
RASGRP4
ENSSSCG00000002960
ENSG00000171777
RAS guanyl releasing protein 4
Tissue enhanced
Detected in many
lymphoid tissue:
25.9
RASIP1
ENSSSCG00000029151
ENSG00000105538
Ras interacting protein 1
Low tissue specificity
Detected in all
RASL10B
ENSSSCG00000036746
ENSG00000270885
RAS like family 10 member B
Tissue enhanced
Detected in many
brain:
32.6
heart:
23.2
RASL11A
ENSSSCG00000039890
ENSG00000122035
RAS like family 11 member A
Low tissue specificity
Detected in all
RASL11B
ENSSSCG00000008835
ENSG00000128045
RAS like family 11 member B
Tissue enhanced
Detected in all
cartilage:
59.1
RASSF1
ENSSSCG00000011407
ENSG00000068028
Ras association domain family member 1
Low tissue specificity
Detected in all
RASSF2
ENSSSCG00000032601
ENSG00000101265
Ras association domain family member 2
Tissue enhanced
Detected in all
dura mater:
59.9
RASSF3
ENSSSCG00000039060
ENSG00000153179
Ras association domain family member 3
Low tissue specificity
Detected in many
RASSF4
ENSSSCG00000029662
ENSG00000107551
Ras association domain-containing protein 4
Low tissue specificity
Detected in all
RASSF5
ENSSSCG00000031970
ENSG00000266094
Ras association domain family member 5
Tissue enhanced
Detected in many
lymphoid tissue:
46.0
salivary gland:
33.0
RASSF7
ENSSSCG00000012854
ENSG00000099849
Ras association domain family member 7
Tissue enhanced
Detected in many
male glands:
26.0
stomach:
18.0
RASSF8
ENSSSCG00000000559
ENSG00000123094
Ras association domain family member 8
Low tissue specificity
Detected in all
RASSF9
ENSSSCG00000034948
ENSG00000198774
Ras association domain family member 9
Low tissue specificity
Detected in all
RAVER1
ENSSSCG00000013650
ENSG00000161847
Ribonucleoprotein, PTB binding 1
Low tissue specificity
Detected in all
RB1
ENSSSCG00000009401
ENSG00000139687
Retinoblastoma-associated protein
Low tissue specificity
Detected in all
RB1CC1
ENSSSCG00000028902
ENSG00000023287
RB1 inducible coiled-coil 1
Low tissue specificity
Detected in all
RBAK
ENSSSCG00000008668
ENSG00000146587
RB associated KRAB zinc finger
Low tissue specificity
Detected in all
RBBP4
ENSSSCG00000028423
ENSG00000162521
RB binding protein 4, chromatin remodeling factor
Low tissue specificity
Detected in all
RBBP5
ENSSSCG00000015288
ENSG00000117222
RB binding protein 5, histone lysine methyltransferase complex subunit
Low tissue specificity
Detected in all
RBBP6
ENSSSCG00000007830
ENSG00000122257
RB binding protein 6, ubiquitin ligase
Low tissue specificity
Detected in all
RBBP7
ENSSSCG00000012149
ENSG00000102054
RB binding protein 7, chromatin remodeling factor
Tissue enhanced
Detected in all
epididymis:
71.7
RBBP9
ENSSSCG00000029494
ENSG00000089050
RB binding protein 9, serine hydrolase
Tissue enhanced
Detected in all
choroid plexus:
40.2
RBCK1
ENSSSCG00000007206
ENSG00000125826
RANBP2-type and C3HC4-type zinc finger containing 1
Low tissue specificity
Detected in all
RBFA
ENSSSCG00000005773
ENSG00000101546
Ribosome binding factor A
Low tissue specificity
Detected in all
RBFOX2
ENSSSCG00000000152
ENSG00000100320
RNA binding protein fox-1 homolog 2
Low tissue specificity
Detected in all
RBFOX3
ENSSSCG00000039498
ENSG00000167281
RNA binding fox-1 homolog 3
Tissue enriched
Detected in some
brain:
43.4
RBKS
ENSSSCG00000038001
ENSG00000171174
Ribokinase
Tissue enhanced
Detected in all
adrenal gland:
40.4
RBL1
ENSSSCG00000007331
ENSG00000080839
RB transcriptional corepressor like 1
Low tissue specificity
Detected in all
RBL2
ENSSSCG00000032648
ENSG00000103479
RB transcriptional corepressor like 2
Low tissue specificity
Detected in all
RBM10
ENSSSCG00000012271
ENSG00000182872
RNA binding motif protein 10
Low tissue specificity
Detected in all
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