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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RAD23A
ENSSSCG00000013747
ENSG00000179262
RAD23 homolog A, nucleotide excision repair protein
Tissue enhanced
Detected in all
lens:
68.9
RAD51AP1
ENSSSCG00000000722
ENSG00000111247
RAD51 associated protein 1
Low tissue specificity
Detected in all
RAD51B
ENSSSCG00000028877
ENSG00000182185
RAD51 paralog B
Low tissue specificity
Detected in all
RAD51C
ENSSSCG00000023955
ENSG00000108384
RAD51 paralog C
Low tissue specificity
Detected in all
RAD51D
ENSSSCG00000026989
ENSG00000185379
RAD51 paralog D
Low tissue specificity
Detected in all
RAD52
ENSSSCG00000000754
ENSG00000002016
DNA repair protein RAD52 homolog
Low tissue specificity
Detected in all
RAD54L
ENSSSCG00000003905
ENSG00000085999
DNA repair and recombination protein RAD54-like
Tissue enhanced
Detected in all
lymphoid tissue:
32.3
RAD54L2
ENSSSCG00000011425
ENSG00000164080
RAD54 like 2
Low tissue specificity
Detected in all
RAD9A
ENSSSCG00000012914
ENSG00000172613
RAD9 checkpoint clamp component A
Low tissue specificity
Detected in all
RAD9B
ENSSSCG00000009824
ENSG00000151164
RAD9 checkpoint clamp component B
Low tissue specificity
Detected in all
RADIL
ENSSSCG00000007575
ENSG00000157927
Rap associating with DIL domain
Tissue enhanced
Detected in many
epididymis:
42.6
RAE1
ENSSSCG00000007503
ENSG00000101146
MRNA export factor
Low tissue specificity
Detected in all
RAF1
ENSSSCG00000024453
ENSG00000132155
Raf-1 proto-oncogene, serine/threonine kinase
Low tissue specificity
Detected in all
RAG2
ENSSSCG00000034285
ENSG00000175097
V(D)J recombination-activating protein 2
Tissue enriched
Detected in many
lymphoid tissue:
40.3
RAI1
ENSSSCG00000038164
ENSG00000108557
Retinoic acid induced 1
Low tissue specificity
Detected in all
RAI14
ENSSSCG00000016824
ENSG00000039560
Ankycorbin
Low tissue specificity
Detected in all
RAI2
ENSSSCG00000012153
ENSG00000131831
Retinoic acid induced 2
Tissue enhanced
Detected in many
cervix:
33.3
fallopian tube:
29.7
heart:
25.9
RALA
ENSSSCG00000029741
ENSG00000006451
RAS like proto-oncogene A
Low tissue specificity
Detected in all
RALB
ENSSSCG00000025455
ENSG00000144118
RAS like proto-oncogene B
Low tissue specificity
Detected in all
RALBP1
ENSSSCG00000003680
ENSG00000017797
RalA binding protein 1
Low tissue specificity
Detected in all
RALGAPA1
ENSSSCG00000032377
ENSG00000174373
Ral GTPase activating protein catalytic alpha subunit 1
Low tissue specificity
Detected in all
RALGAPA2
ENSSSCG00000026506
ENSG00000188559
Ral GTPase activating protein catalytic alpha subunit 2
Low tissue specificity
Detected in all
RALGAPB
ENSSSCG00000007345
ENSG00000170471
Ral GTPase activating protein non-catalytic beta subunit
Tissue enhanced
Detected in all
male glands:
77.9
RALGPS1
ENSSSCG00000005607
ENSG00000136828
Ral GEF with PH domain and SH3 binding motif 1
Low tissue specificity
Detected in all
RALGPS2
ENSSSCG00000015523
ENSG00000116191
Ral GEF with PH domain and SH3 binding motif 2
Low tissue specificity
Detected in all
RALY
ENSSSCG00000007275
ENSG00000125970
RALY heterogeneous nuclear ribonucleoprotein
Low tissue specificity
Detected in all
RAMP1
ENSSSCG00000016331
ENSG00000132329
Receptor activity-modifying protein 1
Tissue enhanced
Detected in many
heart:
145.3
skeletal muscle:
82.5
RAMP2
ENSSSCG00000017389
ENSG00000131477
Receptor activity-modifying protein 2 precursor
Low tissue specificity
Detected in many
RAMP3
ENSSSCG00000031144
ENSG00000122679
Receptor activity-modifying protein 3 precursor
Tissue enhanced
Detected in many
brain:
36.7
pineal gland:
12.1
RANBP1
ENSSSCG00000038308
ENSG00000099901
Ran-specific GTPase-activating protein
Tissue enhanced
Detected in all
testis:
130.3
RANBP10
ENSSSCG00000021803
ENSG00000141084
RAN binding protein 10
Low tissue specificity
Detected in all
RANBP17
ENSSSCG00000017000
ENSG00000204764
RAN binding protein 17
Low tissue specificity
Detected in all
RANBP3
ENSSSCG00000013533
ENSG00000031823
RAN binding protein 3
Low tissue specificity
Detected in all
RANBP3L
ENSSSCG00000016838
ENSG00000164188
RAN binding protein 3 like
Tissue enriched
Detected in many
kidney:
94.2
RANBP6
ENSSSCG00000005204
ENSG00000137040
RAN binding protein 6
Low tissue specificity
Detected in all
RANBP9
ENSSSCG00000001056
ENSG00000010017
RAN binding protein 9
Low tissue specificity
Detected in all
RANGAP1
ENSSSCG00000028202
ENSG00000100401
Ran GTPase activating protein 1
Tissue enhanced
Detected in all
testis:
54.9
RANGRF
ENSSSCG00000038726
ENSG00000108961
Ran guanine nucleotide release factor isoform 2
Tissue enhanced
Detected in all
pineal gland:
20.3
testis:
20.5
RAP1A
ENSSSCG00000006785
ENSG00000116473
RAP1A, member of RAS oncogene family
Low tissue specificity
Detected in all
RAP1B
ENSSSCG00000032595
ENSG00000127314
RAP1B, member of RAS oncogene family
Low tissue specificity
Detected in all
RAP1GDS1
ENSSSCG00000022353
ENSG00000138698
Rap1 GTPase-GDP dissociation stimulator 1
Low tissue specificity
Detected in all
RAP2A
ENSSSCG00000039812
ENSG00000125249
RAP2A, member of RAS oncogene family
Tissue enhanced
Detected in all
brain:
36.8
RAP2B
ENSSSCG00000038366
ENSG00000181467
Ras-related protein Rap-2a
Low tissue specificity
Detected in all
RAP2C
ENSSSCG00000026301
ENSG00000123728
RAP2C, member of RAS oncogene family
Low tissue specificity
Detected in all
RAPGEF1
ENSSSCG00000005719
ENSG00000107263
Rap guanine nucleotide exchange factor 1
Low tissue specificity
Detected in all
RAPGEF2
ENSSSCG00000008881
ENSG00000109756
Rap guanine nucleotide exchange factor 2
Low tissue specificity
Detected in all
RAPGEF3
ENSSSCG00000023526
ENSG00000079337
Rap guanine nucleotide exchange factor 3
Low tissue specificity
Detected in many
RAPGEF4
ENSSSCG00000015959
ENSG00000091428
Rap guanine nucleotide exchange factor 4
Tissue enhanced
Detected in many
adrenal gland:
41.6
brain:
35.4
RAPGEF5
ENSSSCG00000015383
ENSG00000136237
Rap guanine nucleotide exchange factor 5
Tissue enhanced
Detected in all
brain:
67.0
RAPGEFL1
ENSSSCG00000017478
ENSG00000108352
Rap guanine nucleotide exchange factor like 1
Tissue enhanced
Detected in many
skin:
35.7
stomach:
57.6
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