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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
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Dura mater
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Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PSMD6
ENSSSCG00000011494
ENSG00000163636
Proteasome 26S subunit, non-ATPase 6
Tissue enhanced
Detected in all
lens:
62.8
PSMD7
ENSSSCG00000032908
ENSG00000103035
Proteasome 26S subunit, non-ATPase 7
Low tissue specificity
Detected in all
PSMD8
ENSSSCG00000036658
ENSG00000099341
Proteasome 26S subunit, non-ATPase 8
Low tissue specificity
Detected in all
PSME1
ENSSSCG00000002006
ENSG00000092010
Proteasome activator complex subunit 1
Low tissue specificity
Detected in all
PSME3
ENSSSCG00000017385
ENSG00000131467
Proteasome activator complex subunit 3
Low tissue specificity
Detected in all
PSME4
ENSSSCG00000008412
ENSG00000068878
Proteasome activator subunit 4
Low tissue specificity
Detected in all
PSMF1
ENSSSCG00000038854
ENSG00000125818
Proteasome inhibitor PI31 subunit
Group enriched
Detected in all
lens:
136.9
testis:
111.7
PSMG3
ENSSSCG00000007556
ENSG00000157778
Proteasome assembly chaperone 3
Low tissue specificity
Detected in all
PSORS1C2
ENSSSCG00000034471
ENSG00000204538
Psoriasis susceptibility 1 candidate gene 2 protein precursor
Tissue enriched
Detected in many
skin:
114.0
PSPC1
ENSSSCG00000009569
ENSG00000121390
Paraspeckle component 1
Low tissue specificity
Detected in all
PSPH
ENSSSCG00000007748
ENSG00000146733
Phosphoserine phosphatase
Low tissue specificity
Detected in all
PSPN
ENSSSCG00000013540
ENSG00000125650
Persephin
Tissue enhanced
Detected in some
choroid plexus:
1.3
mesothelial tissue:
1.8
stomach:
1.6
PSRC1
ENSSSCG00000036975
ENSG00000134222
Proline and serine rich coiled-coil 1
Tissue enhanced
Detected in many
epididymis:
23.4
PSTK
ENSSSCG00000010721
ENSG00000179988
Phosphoseryl-tRNA kinase
Low tissue specificity
Detected in all
PSTPIP1
ENSSSCG00000001867
ENSG00000140368
Proline-serine-threonine phosphatase-interacting protein 1
Low tissue specificity
Detected in all
PSTPIP2
ENSSSCG00000004497
ENSG00000152229
Proline-serine-threonine phosphatase interacting protein 2
Group enriched
Detected in many
lymphoid tissue:
58.5
skeletal muscle:
57.8
PTAFR
ENSSSCG00000031788
ENSG00000169403
Platelet activating factor receptor
Tissue enhanced
Detected in many
synovial tissue:
31.3
PTAR1
ENSSSCG00000005252
ENSG00000188647
Protein prenyltransferase alpha subunit repeat containing 1
Low tissue specificity
Detected in all
PTBP2
ENSSSCG00000006879
ENSG00000117569
Polypyrimidine tract binding protein 2
Low tissue specificity
Detected in all
PTBP3
ENSSSCG00000005466
ENSG00000119314
Polypyrimidine tract-binding protein 3
Low tissue specificity
Detected in all
PTCD2
ENSSSCG00000016975
ENSG00000049883
Pentatricopeptide repeat domain 2
Low tissue specificity
Detected in all
PTCD3
ENSSSCG00000008225
ENSG00000132300
Pentatricopeptide repeat domain-containing protein 3, mitochondrial
Low tissue specificity
Detected in all
PTCH1
ENSSSCG00000027312
ENSG00000185920
Patched 1
Tissue enhanced
Detected in all
cartilage:
55.5
vagus nerve:
69.7
PTCH2
ENSSSCG00000031977
ENSG00000117425
Patched 2
Tissue enhanced
Detected in many
cartilage:
28.8
PTCRA
ENSSSCG00000001650
ENSG00000171611
Pre T-cell antigen receptor alpha isoform 1 precursor
Tissue enriched
Detected in some
lymphoid tissue:
52.8
PTDSS1
ENSSSCG00000006089
ENSG00000156471
Phosphatidylserine synthase 1
Tissue enriched
Detected in all
heart:
138.5
PTDSS2
ENSSSCG00000037427
ENSG00000174915
Phosphatidylserine synthase 2
Low tissue specificity
Detected in all
PTER
ENSSSCG00000022953
ENSG00000165983
Phosphotriesterase-related protein
Tissue enhanced
Detected in all
kidney:
61.1
PTGDR2
ENSSSCG00000013106
ENSG00000183134
Prostaglandin D2 receptor 2
Tissue enhanced
Detected in many
synovial tissue:
12.4
PTGDS
ENSSSCG00000040080
Prostaglandin-H2 D-isomerase precursor
Tissue enhanced
Detected in many
brain:
33.6
cornea:
21.9
ductus deferens:
33.4
PTGER2
ENSSSCG00000021862
ENSG00000125384
Prostaglandin E receptor 2
Low tissue specificity
Detected in all
PTGER4
ENSSSCG00000024439
ENSG00000171522
Prostaglandin E receptor 4
Tissue enhanced
Detected in many
bone marrow:
26.7
PTGES2
ENSSSCG00000022655
ENSG00000148334
Prostaglandin E synthase 2
Low tissue specificity
Detected in all
PTGES3
ENSSSCG00000000406
ENSG00000110958
Prostaglandin E synthase 3
Low tissue specificity
Detected in all
PTGES3L
ENSSSCG00000035199
ENSG00000267060
Prostaglandin E synthase 3 like
Low tissue specificity
Detected in all
PTGFRN
ENSSSCG00000006735
ENSG00000134247
Prostaglandin F2 receptor inhibitor
Low tissue specificity
Detected in all
PTGIR
ENSSSCG00000026602
ENSG00000160013
Prostaglandin I2 receptor
Tissue enhanced
Detected in all
cartilage:
31.1
PTGIS
ENSSSCG00000007463
ENSG00000124212
Prostaglandin I2 synthase
Tissue enhanced
Detected in many
penis:
81.8
PTGR1
ENSSSCG00000021386
ENSG00000106853
Prostaglandin reductase 1
Tissue enhanced
Detected in all
adipose tissue:
65.0
liver:
50.5
PTGS1
ENSSSCG00000005533
ENSG00000095303
Prostaglandin-endoperoxide synthase 1
Tissue enhanced
Detected in many
cartilage:
42.8
gallbladder:
36.3
PTGS2
ENSSSCG00000015579
ENSG00000073756
Prostaglandin G/H synthase 2 precursor
Low tissue specificity
Detected in many
PTH1R
ENSSSCG00000011326
ENSG00000160801
Parathyroid hormone/parathyroid hormone-related peptide receptor
Tissue enhanced
Detected in many
cartilage:
47.4
kidney:
49.9
PTHLH
ENSSSCG00000036893
ENSG00000087494
Parathyroid hormone-related protein precursor
Tissue enhanced
Detected in all
male glands:
30.5
PTK2
ENSSSCG00000038397
ENSG00000169398
Protein tyrosine kinase 2
Low tissue specificity
Detected in all
PTK2B
ENSSSCG00000009664
ENSG00000120899
Protein tyrosine kinase 2 beta
Tissue enhanced
Detected in many
brain:
63.3
PTK6
ENSSSCG00000031474
ENSG00000101213
Protein tyrosine kinase 6
Low tissue specificity
Detected in many
PTK7
ENSSSCG00000001660
ENSG00000112655
Protein tyrosine kinase 7 (inactive)
Low tissue specificity
Detected in all
PTN
ENSSSCG00000016522
ENSG00000105894
Pleiotrophin
Tissue enhanced
Detected in many
brain:
68.8
dura mater:
88.3
gallbladder:
116.6
PTOV1
ENSSSCG00000003196
ENSG00000104960
Prostate tumor overexpressed 1
Tissue enhanced
Detected in all
lens:
142.9
PTP4A1
ENSSSCG00000025941
ENSG00000112245
Protein tyrosine phosphatase type IVA, member 1
Low tissue specificity
Detected in all
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