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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PRRT1
ENSSSCG00000024403
ENSG00000204314
Proline-rich transmembrane protein 1
Tissue enhanced
Detected in many
brain:
47.7
thyroid gland:
44.6
PRRT1B
ENSSSCG00000031465
ENSG00000283526
Proline rich transmembrane protein 1B
Tissue enhanced
Detected in all
kidney:
28.2
PRRT3
ENSSSCG00000011561
ENSG00000163704
Proline rich transmembrane protein 3
Tissue enhanced
Detected in all
brain:
18.1
pituitary gland:
16.0
PRRX1
ENSSSCG00000031503
ENSG00000116132
Paired related homeobox 1
Tissue enhanced
Detected in many
cervix:
63.8
dura mater:
70.7
PRSS12
ENSSSCG00000009114
ENSG00000164099
Serine protease 12
Tissue enhanced
Detected in all
choroid plexus:
55.3
PRSS16
ENSSSCG00000025410
ENSG00000112812
Serine protease 16
Tissue enriched
Detected in all
lymphoid tissue:
113.9
PRSS22
ENSSSCG00000035594
ENSG00000005001
Serine protease 22
Tissue enriched
Detected in all
male glands:
44.5
PRSS23
ENSSSCG00000014921
ENSG00000150687
Serine protease 23
Tissue enhanced
Detected in all
ovary:
56.4
PRSS33
ENSSSCG00000030518
ENSG00000103355
Serine protease 33
Tissue enhanced
Detected in some
male glands:
20.5
salivary gland:
10.3
upper respiratory system:
20.2
PRSS35
ENSSSCG00000004452
ENSG00000146250
Serine protease 35
Tissue enhanced
Detected in many
cartilage:
24.8
synovial tissue:
83.6
PRSS48
ENSSSCG00000009017
ENSG00000189099
Serine protease 48
Tissue enhanced
Detected in many
choroid plexus:
43.9
PRSS53
ENSSSCG00000007765
ENSG00000151006
Serine protease 53
Low tissue specificity
Detected in all
PRSS54
ENSSSCG00000028587
ENSG00000103023
Serine protease 54
Tissue enriched
Detected in some
testis:
48.9
PRSS55
ENSSSCG00000009687
ENSG00000184647
Serine protease 55
Tissue enhanced
Detected in all
testis:
38.5
PRUNE1
ENSSSCG00000006641
ENSG00000143363
Prune exopolyphosphatase 1
Low tissue specificity
Detected in all
PSAP
ENSSSCG00000010281
ENSG00000197746
Saposin-B-Val precursor
Tissue enhanced
Detected in all
choroid plexus:
224.0
PSD2
ENSSSCG00000029541
ENSG00000146005
Pleckstrin and Sec7 domain containing 2
Tissue enhanced
Detected in many
brain:
30.4
epididymis:
29.1
PSD3
ENSSSCG00000007034
ENSG00000156011
Pleckstrin and Sec7 domain containing 3
Tissue enhanced
Detected in all
brain:
44.7
PSEN1
ENSSSCG00000002340
ENSG00000080815
Presenilin-1
Low tissue specificity
Detected in all
PSEN2
ENSSSCG00000010860
ENSG00000143801
Presenilin-2 Presenilin-2 NTF subunit Presenilin-2 CTF subunit
Tissue enhanced
Detected in all
liver:
64.7
PSIP1
ENSSSCG00000005183
ENSG00000164985
PC4 and SFRS1-interacting protein
Tissue enhanced
Detected in all
testis:
92.1
PSKH1
ENSSSCG00000040313
ENSG00000159792
Protein serine kinase H1
Low tissue specificity
Detected in all
PSMA3
ENSSSCG00000005072
ENSG00000100567
Proteasome subunit alpha 3
Low tissue specificity
Detected in all
PSMA4
ENSSSCG00000036924
ENSG00000041357
Proteasome subunit alpha type-4
Low tissue specificity
Detected in all
PSMA6
ENSSSCG00000001951
ENSG00000100902
Proteasome subunit alpha type-6
Low tissue specificity
Detected in all
PSMA7
ENSSSCG00000033332
ENSG00000101182
Proteasome subunit alpha type-7
Low tissue specificity
Detected in all
PSMB1
ENSSSCG00000027257
ENSG00000008018
Proteasome subunit beta type-1
Tissue enhanced
Detected in all
lens:
108.0
PSMB10
ENSSSCG00000031781
ENSG00000205220
Proteasome subunit beta type-10
Tissue enhanced
Detected in all
large intestine:
59.2
PSMB2
ENSSSCG00000035914
ENSG00000126067
Proteasome subunit beta 2
Tissue enhanced
Detected in all
lens:
56.7
PSMB3
ENSSSCG00000037606
ENSG00000277791
Proteasome subunit beta type-3
Low tissue specificity
Detected in all
PSMB4
ENSSSCG00000034984
ENSG00000159377
Proteasome subunit beta type-4
Low tissue specificity
Detected in all
PSMB6
ENSSSCG00000017913
ENSG00000142507
Proteasome subunit beta type-6
Tissue enhanced
Detected in all
lens:
55.9
PSMB7
ENSSSCG00000005590
ENSG00000136930
Proteasome subunit beta type-7
Tissue enhanced
Detected in all
lens:
114.5
PSMB8
ENSSSCG00000026951
ENSG00000204264
Proteasome subunit beta 8
Tissue enhanced
Detected in many
large intestine:
38.6
lymphoid tissue:
36.3
PSMB9
ENSSSCG00000001463
ENSG00000240065
Proteasome subunit beta type-9
Tissue enhanced
Detected in many
large intestine:
46.4
PSMC1
ENSSSCG00000002433
ENSG00000100764
26S protease regulatory subunit 4
Low tissue specificity
Detected in all
PSMC2
ENSSSCG00000015424
ENSG00000161057
26S protease regulatory subunit 7
Low tissue specificity
Detected in all
PSMC3
ENSSSCG00000013239
ENSG00000165916
Proteasome 26S subunit, ATPase 3
Tissue enhanced
Detected in all
lens:
81.2
PSMC4
ENSSSCG00000039235
ENSG00000013275
Proteasome 26S subunit, ATPase 4
Low tissue specificity
Detected in all
PSMC5
ENSSSCG00000017287
ENSG00000087191
26S proteasome regulatory subunit 8
Tissue enhanced
Detected in all
lens:
94.3
PSMC6
ENSSSCG00000005038
ENSG00000100519
Proteasome 26S subunit, ATPase 6
Low tissue specificity
Detected in all
PSMD1
ENSSSCG00000016272
ENSG00000173692
Proteasome 26S subunit, non-ATPase 1
Low tissue specificity
Detected in all
PSMD10
ENSSSCG00000033180
ENSG00000101843
Proteasome 26S subunit, non-ATPase 10
Low tissue specificity
Detected in all
PSMD11
ENSSSCG00000017731
ENSG00000108671
Proteasome 26S subunit, non-ATPase 11
Tissue enhanced
Detected in all
lens:
94.3
PSMD12
ENSSSCG00000017273
ENSG00000197170
Proteasome 26S subunit, non-ATPase 12
Tissue enhanced
Detected in all
lens:
50.4
PSMD13
ENSSSCG00000014559
ENSG00000185627
Proteasome 26S subunit, non-ATPase 13
Low tissue specificity
Detected in all
PSMD14
ENSSSCG00000015892
ENSG00000115233
Proteasome 26S subunit, non-ATPase 14
Tissue enhanced
Detected in all
lens:
56.2
PSMD2
ENSSSCG00000023998
ENSG00000175166
26S proteasome non-ATPase regulatory subunit 2
Low tissue specificity
Detected in all
PSMD3
ENSSSCG00000017489
ENSG00000108344
Proteasome 26S subunit, non-ATPase 3
Tissue enhanced
Detected in all
lens:
114.2
PSMD5
ENSSSCG00000005507
ENSG00000095261
Proteasome 26S subunit, non-ATPase 5
Low tissue specificity
Detected in all
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