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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PTP4A2
ENSSSCG00000039885
ENSG00000184007
Protein tyrosine phosphatase type IVA 2
Low tissue specificity
Detected in all
PTPA
ENSSSCG00000005672
ENSG00000119383
Protein phosphatase 2 phosphatase activator
Low tissue specificity
Detected in all
PTPDC1
ENSSSCG00000021704
ENSG00000158079
Protein tyrosine phosphatase domain containing 1
Tissue enhanced
Detected in all
vagus nerve:
43.6
PTPMT1
ENSSSCG00000013226
ENSG00000110536
Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1
Low tissue specificity
Detected in all
PTPN1
ENSSSCG00000007469
ENSG00000196396
Tyrosine-protein phosphatase non-receptor type 1
Low tissue specificity
Detected in all
PTPN11
ENSSSCG00000030289
ENSG00000179295
Protein tyrosine phosphatase, non-receptor type 11
Low tissue specificity
Detected in all
PTPN12
ENSSSCG00000015411
ENSG00000127947
Protein tyrosine phosphatase, non-receptor type 12
Low tissue specificity
Detected in all
PTPN13
ENSSSCG00000026655
ENSG00000163629
Protein tyrosine phosphatase, non-receptor type 13
Low tissue specificity
Detected in all
PTPN14
ENSSSCG00000015582
ENSG00000152104
Protein tyrosine phosphatase, non-receptor type 14
Low tissue specificity
Detected in many
PTPN18
ENSSSCG00000015735
ENSG00000072135
Protein tyrosine phosphatase, non-receptor type 18
Tissue enhanced
Detected in many
male glands:
60.7
PTPN20
ENSSSCG00000010377
ENSG00000204179
Protein tyrosine phosphatase, non-receptor type 20
Low tissue specificity
Detected in all
PTPN21
ENSSSCG00000002425
ENSG00000070778
Protein tyrosine phosphatase, non-receptor type 21
Low tissue specificity
Detected in all
PTPN23
ENSSSCG00000032957
ENSG00000076201
Protein tyrosine phosphatase, non-receptor type 23
Low tissue specificity
Detected in all
PTPN3
ENSSSCG00000005449
ENSG00000070159
Protein tyrosine phosphatase, non-receptor type 3
Low tissue specificity
Detected in all
PTPN4
ENSSSCG00000015743
ENSG00000088179
Protein tyrosine phosphatase, non-receptor type 4
Tissue enhanced
Detected in all
brain:
34.1
skeletal muscle:
32.3
PTPN6
ENSSSCG00000025537
ENSG00000111679
Protein tyrosine phosphatase, non-receptor type 6
Tissue enhanced
Detected in all
lymphoid tissue:
57.4
PTPN7
ENSSSCG00000037669
ENSG00000143851
Protein tyrosine phosphatase, non-receptor type 7
Tissue enhanced
Detected in many
lymphoid tissue:
35.0
stomach:
18.3
PTPN9
ENSSSCG00000001878
ENSG00000169410
Protein tyrosine phosphatase, non-receptor type 9
Low tissue specificity
Detected in all
PTPRA
ENSSSCG00000007166
ENSG00000132670
Receptor-type tyrosine-protein phosphatase alpha precursor
Tissue enhanced
Detected in all
lens:
98.1
PTPRB
ENSSSCG00000000504
ENSG00000127329
Protein tyrosine phosphatase, receptor type B
Low tissue specificity
Detected in many
PTPRC
ENSSSCG00000010908
ENSG00000081237
Protein tyrosine phosphatase, receptor type C
Tissue enhanced
Detected in many
lung:
34.8
lymphoid tissue:
98.6
upper respiratory system:
33.5
PTPRE
ENSSSCG00000010755
ENSG00000132334
Protein tyrosine phosphatase, receptor type E
Low tissue specificity
Detected in many
PTPRF
ENSSSCG00000035849
ENSG00000142949
Protein tyrosine phosphatase, receptor type F
Low tissue specificity
Detected in many
PTPRG
ENSSSCG00000011485
ENSG00000144724
Protein tyrosine phosphatase, receptor type G
Low tissue specificity
Detected in all
PTPRH
ENSSSCG00000024567
ENSG00000080031
Protein tyrosine phosphatase, receptor type H
Group enriched
Detected in some
large intestine:
31.1
small intestine:
24.3
stomach:
31.4
PTPRJ
ENSSSCG00000023709
ENSG00000149177
Protein tyrosine phosphatase, receptor type J
Low tissue specificity
Detected in all
PTPRK
ENSSSCG00000004209
ENSG00000152894
Protein tyrosine phosphatase, receptor type K
Low tissue specificity
Detected in all
PTPRM
ENSSSCG00000028805
ENSG00000173482
Protein tyrosine phosphatase, receptor type M
Low tissue specificity
Detected in all
PTPRQ
ENSSSCG00000031716
ENSG00000139304
Protein tyrosine phosphatase, receptor type Q
Tissue enhanced
Detected in some
choroid plexus:
37.4
kidney:
21.3
mesothelial tissue:
74.0
PTPRR
ENSSSCG00000025969
ENSG00000153233
Protein tyrosine phosphatase, receptor type R
Tissue enhanced
Detected in many
retina:
40.8
PTPRS
ENSSSCG00000028612
ENSG00000105426
Protein tyrosine phosphatase, receptor type S
Low tissue specificity
Detected in all
PTPRU
ENSSSCG00000003590
ENSG00000060656
Protein tyrosine phosphatase, receptor type U
Tissue enriched
Detected in many
lens:
75.6
PTRH1
ENSSSCG00000005615
ENSG00000187024
Probable peptidyl-tRNA hydrolase
Low tissue specificity
Detected in all
PTRH2
ENSSSCG00000017667
ENSG00000141378
Peptidyl-tRNA hydrolase 2
Tissue enhanced
Detected in many
lens:
16.3
PTTG1IP
ENSSSCG00000031249
ENSG00000183255
PTTG1 interacting protein
Low tissue specificity
Detected in all
PTX4
ENSSSCG00000037262
ENSG00000251692
Pentraxin 4
Tissue enhanced
Detected in all
epididymis:
51.3
male glands:
34.0
PUF60
ENSSSCG00000038800
ENSG00000179950
Poly(U) binding splicing factor 60
Low tissue specificity
Detected in all
PUM1
ENSSSCG00000003591
ENSG00000134644
Pumilio RNA binding family member 1
Low tissue specificity
Detected in all
PUM2
ENSSSCG00000008600
ENSG00000055917
Pumilio RNA binding family member 2
Low tissue specificity
Detected in all
PUM3
ENSSSCG00000005227
ENSG00000080608
Pumilio RNA binding family member 3
Low tissue specificity
Detected in all
PURB
ENSSSCG00000032464
ENSG00000146676
Purine rich element binding protein B
Low tissue specificity
Detected in all
PURG
ENSSSCG00000038933
ENSG00000172733
Purine rich element binding protein G
Tissue enhanced
Detected in all
pineal gland:
45.6
PUS1
ENSSSCG00000009741
ENSG00000177192
Pseudouridylate synthase 1
Low tissue specificity
Detected in all
PUS3
ENSSSCG00000015222
ENSG00000110060
TRNA pseudouridine(38/39) synthase
Low tissue specificity
Detected in all
PUS7
ENSSSCG00000015428
ENSG00000091127
Pseudouridylate synthase 7 (putative)
Tissue enhanced
Detected in all
choroid plexus:
71.1
PUS7L
ENSSSCG00000000800
ENSG00000129317
Pseudouridylate synthase 7 like
Low tissue specificity
Detected in all
PUSL1
ENSSSCG00000003338
ENSG00000169972
Pseudouridylate synthase-like 1
Low tissue specificity
Detected in all
PVRIG
ENSSSCG00000007656
ENSG00000213413
Transmembrane protein PVRIG precursor
Tissue enhanced
Detected in all
lymphoid tissue:
28.2
stomach:
18.3
PWP1
ENSSSCG00000000161
ENSG00000136045
PWP1 homolog, endonuclein
Low tissue specificity
Detected in all
PWWP2B
ENSSSCG00000023681
ENSG00000171813
PWWP domain containing 2B
Tissue enhanced
Detected in many
stomach:
35.8
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