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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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390 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000038561
Tissue enriched
Detected in some
skeletal muscle:
478.2
na
ENSSSCG00000039304
Tissue enhanced
Detected in many
cornea:
52.0
mouth:
23.0
na
ENSSSCG00000039405
Tissue enhanced
Detected in many
stomach:
18.3
upper respiratory system:
24.0
na
ENSSSCG00000039510
Group enriched
Detected in some
brain:
12.2
small intestine:
13.9
stomach:
21.5
na
ENSSSCG00000039511
Group enriched
Detected in some
large intestine:
216.4
small intestine:
64.6
stomach:
229.8
na
ENSSSCG00000039764
Tissue enriched
Detected in some
testis:
40.1
na
ENSSSCG00000040035
ENSG00000198788
Group enriched
Detected in some
large intestine:
166.2
small intestine:
75.6
stomach:
258.5
na
ENSSSCG00000040129
Tissue enhanced
Detected in many
brain:
67.8
cervix:
39.8
na
ENSSSCG00000040522
Tissue enhanced
Detected in many
large intestine:
8.8
small intestine:
12.1
upper respiratory system:
14.8
na
ENSSSCG00000040748
Tissue enhanced
Detected in many
male glands:
25.3
na
ENSSSCG00000040849
Tissue enhanced
Detected in many
lymphoid tissue:
80.5
small intestine:
26.0
stomach:
36.5
upper respiratory system:
28.4
NCF1
ENSSSCG00000007722
ENSG00000158517
Neutrophil cytosol factor 1
Tissue enhanced
Detected in many
lymphoid tissue:
34.1
ND5
ENSSSCG00000018091
ENSG00000198786
NADH-ubiquinone oxidoreductase chain 5
Tissue enhanced
Detected in all
heart:
1058.0
NFATC1
ENSSSCG00000004856
ENSG00000131196
Nuclear factor of activated T-cells, cytoplasmic 1
Tissue enhanced
Detected in many
cartilage:
112.0
NOTUM
ENSSSCG00000039013
ENSG00000185269
Notum, palmitoleoyl-protein carboxylesterase
Tissue enriched
Detected in many
liver:
58.8
NOXO1
ENSSSCG00000008034
ENSG00000196408
NADPH oxidase organizer 1
Tissue enhanced
Detected in some
gallbladder:
11.3
large intestine:
21.9
stomach:
33.0
NPR3
ENSSSCG00000036201
ENSG00000113389
Natriuretic peptide receptor 3
Tissue enhanced
Detected in many
choroid plexus:
21.9
cornea:
33.2
lens:
39.8
NR1I2
ENSSSCG00000011890
ENSG00000144852
Nuclear receptor subfamily 1 group I member 2
Tissue enhanced
Detected in all
large intestine:
34.3
liver:
64.9
small intestine:
39.5
NRARP
ENSSSCG00000005844
ENSG00000198435
NOTCH regulated ankyrin repeat protein
Tissue enhanced
Detected in all
testis:
90.1
urinary bladder:
83.9
NRG4
ENSSSCG00000001860
ENSG00000169752
Neuregulin 4
Tissue enhanced
Detected in many
brain:
66.0
male glands:
67.5
NUGGC
ENSSSCG00000009673
ENSG00000189233
Nuclear GTPase, germinal center associated
Tissue enhanced
Detected in all
liver:
39.4
lymphoid tissue:
40.6
NYAP2
ENSSSCG00000016239
ENSG00000144460
Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2
Tissue enhanced
Detected in some
brain:
19.6
lens:
28.2
pineal gland:
19.3
retina:
18.4
P2RY2
ENSSSCG00000040207
ENSG00000175591
P2Y purinoceptor 2
Tissue enhanced
Detected in many
vagus nerve:
52.1
P2RY8
ENSSSCG00000035911
ENSG00000182162
P2Y receptor family member 8
Tissue enhanced
Detected in many
lymphoid tissue:
43.0
upper respiratory system:
30.2
PADI1
ENSSSCG00000003481
ENSG00000142623
Peptidyl arginine deiminase 1
Tissue enhanced
Detected in some
stomach:
23.5
upper respiratory system:
58.7
PANX2
ENSSSCG00000000975
ENSG00000073150
Pannexin 2
Tissue enhanced
Detected in many
brain:
28.5
PAPSS2
ENSSSCG00000010437
ENSG00000198682
3'-phosphoadenosine 5'-phosphosulfate synthase 2
Tissue enhanced
Detected in all
adrenal gland:
43.8
ovary:
53.6
testis:
77.5
PAQR7
ENSSSCG00000003551
ENSG00000182749
Membrane progestin receptor alpha
Tissue enhanced
Detected in many
brain:
15.8
testis:
21.3
PAX6
ENSSSCG00000013320
ENSG00000007372
Paired box protein Pax-6 isoform 1
Tissue enhanced
Detected in some
cornea:
121.0
lens:
48.8
retina:
31.4
PCED1B
ENSSSCG00000000811
ENSG00000179715
PC-esterase domain containing 1B
Tissue enhanced
Detected in many
endometrium:
46.4
lymphoid tissue:
51.7
PCSK2
ENSSSCG00000007083
ENSG00000125851
Neuroendocrine convertase 2 precursor
Tissue enhanced
Detected in some
brain:
38.0
pituitary gland:
51.1
thyroid gland:
19.5
PDCD1
ENSSSCG00000037319
ENSG00000188389
Programmed cell death protein 1 precursor
Tissue enhanced
Detected in some
large intestine:
11.0
lymphoid tissue:
14.8
thyroid gland:
7.5
PDX1
ENSSSCG00000035817
ENSG00000139515
Pancreatic and duodenal homeobox 1
Tissue enhanced
Detected in some
gallbladder:
6.9
small intestine:
29.1
stomach:
9.1
PENK
ENSSSCG00000006243
ENSG00000181195
Proenkephalin
Tissue enhanced
Detected in many
adrenal gland:
92.5
brain:
162.9
PGA5
ENSSSCG00000013092
ENSG00000229183,ENSG00000229859,ENSG00000256713
Pepsin A
Tissue enriched
Detected in single
stomach:
413.6
PGAM2
ENSSSCG00000016720
ENSG00000164708
Phosphoglycerate mutase 2
Tissue enriched
Detected in some
skeletal muscle:
191.4
PGC
ENSSSCG00000001625
ENSG00000096088
Progastricsin
Tissue enriched
Detected in some
stomach:
240.5
PIGR
ENSSSCG00000015657
ENSG00000162896
Polymeric immunoglobulin receptor precursor
Tissue enhanced
Detected in some
large intestine:
90.9
small intestine:
256.4
stomach:
136.2
upper respiratory system:
337.1
PIK3CD
ENSSSCG00000003395
ENSG00000171608
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta
Tissue enhanced
Detected in all
lymphoid tissue:
41.1
stomach:
40.1
PKIB
ENSSSCG00000004236
ENSG00000135549
CAMP-dependent protein kinase inhibitor beta
Tissue enhanced
Detected in many
brain:
30.0
cornea:
40.2
male glands:
32.0
stomach:
35.0
PLA2G2D
ENSSSCG00000031106
ENSG00000117215
Group IID secretory phospholipase A2 precursor
Tissue enhanced
Detected in some
large intestine:
11.1
lymphoid tissue:
41.0
small intestine:
11.9
upper respiratory system:
14.0
PLEKHN1
ENSSSCG00000030505
ENSG00000187583
Pleckstrin homology domain containing N1
Group enriched
Detected in some
cornea:
18.6
mouth:
19.4
skin:
56.3
small intestine:
14.6
PNLIPRP2
ENSSSCG00000010660
Pancreatic lipase-related protein 2 precursor
Tissue enriched
Detected in some
stomach:
238.7
POU2F2
ENSSSCG00000037132
ENSG00000028277
POU domain, class 2, transcription factor 2
Tissue enhanced
Detected in many
lymphoid tissue:
56.2
stomach:
25.0
upper respiratory system:
25.1
POU2F3
ENSSSCG00000028237
ENSG00000137709
POU class 2 homeobox 3
Group enriched
Detected in some
breast:
35.7
skin:
88.7
PPM1L
ENSSSCG00000023434
ENSG00000163590
Protein phosphatase, Mg2+/Mn2+ dependent 1L
Tissue enhanced
Detected in many
skeletal muscle:
36.8
PPP1R16B
ENSSSCG00000007350
ENSG00000101445
Protein phosphatase 1 regulatory subunit 16B
Tissue enhanced
Detected in many
brain:
54.6
PSCA
ENSSSCG00000035372
ENSG00000167653
Prostate stem cell antigen
Tissue enriched
Detected in some
stomach:
478.2
PSORS1C2
ENSSSCG00000034471
ENSG00000204538
Psoriasis susceptibility 1 candidate gene 2 protein precursor
Tissue enriched
Detected in many
skin:
114.0
PTGR1
ENSSSCG00000021386
ENSG00000106853
Prostaglandin reductase 1
Tissue enhanced
Detected in all
adipose tissue:
65.0
liver:
50.5
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