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Chromosome
1
2
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6
7
8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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390 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
A2M
ENSSSCG00000000660
ENSG00000175899
Alpha-2-macroglobulin
Tissue enhanced
Detected in many
adrenal gland:
238.9
liver:
109.4
testis:
79.2
ABCA3
ENSSSCG00000008051
ENSG00000167972
ATP binding cassette subfamily A member 3
Tissue enhanced
Detected in all
lung:
28.6
ABCA5
ENSSSCG00000017255
ENSG00000154265
ATP binding cassette subfamily A member 5
Tissue enhanced
Detected in all
epididymis:
39.2
ACTA2
ENSSSCG00000010447
ENSG00000107796
Actin, aortic smooth muscle
Tissue enhanced
Detected in many
ductus deferens:
294.9
endometrium:
265.1
penis:
206.0
ACTG2
ENSSSCG00000008294
ENSG00000163017
Actin, gamma 2, smooth muscle, enteric
Tissue enriched
Detected in many
smooth muscle:
747.6
ADA
ENSSSCG00000021255
ENSG00000196839
Adenosine deaminase
Tissue enhanced
Detected in many
mouth:
124.3
small intestine:
43.7
stomach:
31.6
ADAM23
ENSSSCG00000016131
ENSG00000114948
ADAM metallopeptidase domain 23
Tissue enhanced
Detected in many
brain:
34.4
vagus nerve:
14.1
ADAM28
ENSSSCG00000009644
ENSG00000042980
ADAM metallopeptidase domain 28
Tissue enhanced
Detected in all
epididymis:
81.1
urinary bladder:
46.5
AFF2
ENSSSCG00000012730
ENSG00000155966
AF4/FMR2 family member 2
Tissue enhanced
Detected in many
epididymis:
37.8
male glands:
53.3
AGR2
ENSSSCG00000015363
ENSG00000106541
Anterior gradient protein 2 homolog precursor
Tissue enriched
Detected in many
male glands:
443.2
ALOX5
ENSSSCG00000010404
ENSG00000012779
Arachidonate 5-lipoxygenase
Tissue enhanced
Detected in many
brain:
15.5
ANKDD1B
ENSSSCG00000014083
ENSG00000189045
Ankyrin repeat and death domain containing 1B
Tissue enhanced
Detected in all
stomach:
29.3
ANXA10
ENSSSCG00000030058
ENSG00000109511
Annexin A10
Tissue enriched
Detected in some
stomach:
84.3
AOC1
ENSSSCG00000016442
ENSG00000002726
Amiloride-sensitive amine oxidase [copper-containing]
Group enriched
Detected in some
kidney:
147.9
large intestine:
49.3
small intestine:
58.7
ARHGAP30
ENSSSCG00000006372
ENSG00000186517
Rho GTPase activating protein 30
Tissue enhanced
Detected in many
lymphoid tissue:
49.6
stomach:
24.2
ARHGAP9
ENSSSCG00000000437
ENSG00000123329
Rho GTPase activating protein 9
Tissue enhanced
Detected in many
lymphoid tissue:
39.7
stomach:
22.3
ARL14
ENSSSCG00000011734
ENSG00000179674
ADP ribosylation factor like GTPase 14
Tissue enriched
Detected in some
large intestine:
42.9
ASGR2
ENSSSCG00000017932
ENSG00000161944
Asialoglycoprotein receptor 2
Tissue enhanced
Detected in many
liver:
68.8
male glands:
21.1
ATF5
ENSSSCG00000003201
ENSG00000169136
Activating transcription factor 5
Tissue enhanced
Detected in all
lens:
54.3
liver:
130.9
salivary gland:
58.8
ATP1B2
ENSSSCG00000017951
ENSG00000129244
ATPase Na+/K+ transporting subunit beta 2
Group enriched
Detected in many
adrenal gland:
44.0
brain:
150.3
pineal gland:
114.3
retina:
78.2
ATP6V0A4
ENSSSCG00000016516
ENSG00000105929
ATPase H+ transporting V0 subunit a4
Group enriched
Detected in many
kidney:
38.1
salivary gland:
24.9
upper respiratory system:
22.4
AUTS2
ENSSSCG00000007727
ENSG00000158321
Autism susceptibility gene 2 protein
Tissue enhanced
Detected in many
cartilage:
165.4
male glands:
64.3
B3GNT6
ENSSSCG00000014874
ENSG00000198488
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6
Group enriched
Detected in many
large intestine:
24.6
stomach:
37.4
BACH2
ENSSSCG00000004332
ENSG00000112182
BTB domain and CNC homolog 2
Tissue enhanced
Detected in many
lymphoid tissue:
26.2
BAIAP2L2
ENSSSCG00000000111
ENSG00000128298
BAI1 associated protein 2 like 2
Tissue enhanced
Detected in many
epididymis:
25.4
kidney:
40.6
large intestine:
45.5
small intestine:
45.7
BATF2
ENSSSCG00000023178
ENSG00000168062
Basic leucine zipper ATF-like transcription factor 2
Tissue enhanced
Detected in many
large intestine:
16.1
stomach:
56.1
BCL11B
ENSSSCG00000002507
ENSG00000127152
B-cell lymphoma/leukemia 11B
Tissue enriched
Detected in many
lymphoid tissue:
85.3
BCL6
ENSSSCG00000011810
ENSG00000113916
B-cell lymphoma 6 protein
Low tissue specificity
Detected in all
BHLHA15
ENSSSCG00000038489
ENSG00000180535
Basic helix-loop-helix family member a15
Tissue enhanced
Detected in many
male glands:
59.2
salivary gland:
80.4
upper respiratory system:
37.6
BLK
ENSSSCG00000027568
ENSG00000136573
BLK proto-oncogene, Src family tyrosine kinase
Tissue enhanced
Detected in many
lymphoid tissue:
32.5
stomach:
14.4
upper respiratory system:
14.3
BTBD11
ENSSSCG00000000162
ENSG00000151136
BTB domain containing 11
Tissue enhanced
Detected in many
skin:
28.9
C11orf53
ENSSSCG00000015018
ENSG00000150750
Chromosome 11 open reading frame 53
Tissue enhanced
Detected in many
stomach:
10.8
upper respiratory system:
18.7
C9
ENSSSCG00000016856
ENSG00000113600
Complement component C9 precursor
Tissue enriched
Detected in some
liver:
150.1
CA2
ENSSSCG00000006140
ENSG00000104267
Carbonic anhydrase 2
Tissue enhanced
Detected in many
choroid plexus:
70.9
stomach:
149.1
CACNA1A
ENSSSCG00000013754
ENSG00000141837
Calcium voltage-gated channel subunit alpha1 A
Tissue enhanced
Detected in many
brain:
52.1
pineal gland:
19.4
CACNA2D3
ENSSSCG00000027019
ENSG00000157445
Calcium voltage-gated channel auxiliary subunit alpha2delta 3
Tissue enhanced
Detected in many
brain:
24.1
heart:
16.5
CADPS
ENSSSCG00000011489
ENSG00000163618
Calcium dependent secretion activator
Tissue enhanced
Detected in some
brain:
34.3
cornea:
14.2
pituitary gland:
14.2
retina:
54.8
CALML5
ENSSSCG00000011141
ENSG00000178372
Calmodulin like 5
Group enriched
Detected in some
mouth:
18.9
skin:
62.5
CAPN13
ENSSSCG00000020986
ENSG00000162949
Calpain 13
Group enriched
Detected in some
stomach:
44.5
upper respiratory system:
61.9
CARD11
ENSSSCG00000034390
ENSG00000198286
Caspase recruitment domain family member 11
Tissue enhanced
Detected in many
heart:
26.3
lymphoid tissue:
33.3
stomach:
42.8
CARD14
ENSSSCG00000017154
ENSG00000141527
Caspase recruitment domain family member 14
Tissue enhanced
Detected in some
male glands:
33.3
salivary gland:
28.2
skin:
24.6
CAVIN3
ENSSSCG00000014633
ENSG00000170955
Caveolae associated protein 3
Low tissue specificity
Detected in many
CBR2
ENSSSCG00000031851
Carbonyl reductase
Group enriched
Detected in many
liver:
177.7
lung:
292.2
upper respiratory system:
105.0
CCL22
ENSSSCG00000002821
ENSG00000102962
C-C motif chemokine 22 precursor
Group enriched
Detected in some
lymphoid tissue:
35.1
testis:
57.7
CCR6
ENSSSCG00000024562
ENSG00000112486
C-C motif chemokine receptor 6
Tissue enhanced
Detected in some
lymphoid tissue:
33.3
stomach:
12.3
upper respiratory system:
8.9
CD22
ENSSSCG00000002893
ENSG00000012124
CD22 molecule
Tissue enhanced
Detected in many
lymphoid tissue:
58.5
stomach:
23.7
upper respiratory system:
23.2
CD247
ENSSSCG00000006309
ENSG00000198821
T-cell surface glycoprotein CD3 zeta chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
72.3
testis:
28.8
CD27
ENSSSCG00000000705
ENSG00000139193
CD27 antigen precursor
Tissue enriched
Detected in many
lymphoid tissue:
73.8
CD38
ENSSSCG00000008742
ENSG00000004468
ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1
Tissue enhanced
Detected in many
brain:
35.6
lymphoid tissue:
15.5
CD4
ENSSSCG00000000687
ENSG00000010610
CD4 molecule
Tissue enriched
Detected in many
lymphoid tissue:
100.2
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