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Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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58 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ADAMTS1
ENSSSCG00000012026
ENSG00000154734
A disintegrin and metalloproteinase with thrombospondin motifs 1 precursor
Tissue enhanced
Detected in many
aorta:
54.6
gallbladder:
47.1
mesothelial tissue:
50.9
ADAMTS4
ENSSSCG00000006359
ENSG00000158859
ADAM metallopeptidase with thrombospondin type 1 motif 4
Group enriched
Detected in many
aorta:
56.1
mesothelial tissue:
84.5
ADRB2
ENSSSCG00000038598
ENSG00000169252
Beta-2 adrenergic receptor
Low tissue specificity
Detected in many
C11orf96
ENSSSCG00000039182
ENSG00000187479
Chromosome 11 open reading frame 96
Tissue enhanced
Detected in many
aorta:
137.7
gallbladder:
125.2
EDNRB
ENSSSCG00000009477
ENSG00000136160
Endothelin receptor type B
Tissue enhanced
Detected in many
adrenal gland:
64.1
choroid plexus:
64.7
cornea:
49.8
ovary:
62.6
ELN
ENSSSCG00000025858
ENSG00000049540
Elastin precursor
Tissue enriched
Detected in many
cartilage:
455.5
ERRFI1
ENSSSCG00000035774
ENSG00000116285
ERBB receptor feedback inhibitor 1
Tissue enhanced
Detected in all
cartilage:
241.4
liver:
92.9
synovial tissue:
95.5
EVA1C
ENSSSCG00000021598
ENSG00000166979
Eva-1 homolog C
Tissue enhanced
Detected in all
mesothelial tissue:
39.7
FABP4
ENSSSCG00000040681
ENSG00000170323
Fatty acid-binding protein, adipocyte
Tissue enhanced
Detected in many
adipose tissue:
239.6
aorta:
112.0
bone marrow:
191.5
GPR4
ENSSSCG00000037184
ENSG00000177464
G-protein coupled receptor 4
Tissue enhanced
Detected in many
mesothelial tissue:
38.0
GSC
ENSSSCG00000002490
ENSG00000133937
Goosecoid homeobox
Tissue enhanced
Detected in some
adipose tissue:
13.4
aorta:
8.0
mesothelial tissue:
14.0
mouth:
8.2
upper respiratory system:
14.1
HYAL2
ENSSSCG00000011405
ENSG00000068001
Hyaluronidase-2 precursor
Tissue enhanced
Detected in all
mesothelial tissue:
74.1
IRX3
ENSSSCG00000002831
ENSG00000177508
Iroquois homeobox 3
Tissue enhanced
Detected in many
breast:
24.6
male glands:
63.3
IRX5
ENSSSCG00000032145
ENSG00000176842
Iroquois homeobox 5
Tissue enhanced
Detected in many
breast:
32.9
male glands:
51.4
ITGA7
ENSSSCG00000036237
ENSG00000135424
Integrin subunit alpha 7
Tissue enhanced
Detected in many
adipose tissue:
76.7
ITIH3
ENSSSCG00000011451
ENSG00000162267
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
Tissue enriched
Detected in many
liver:
105.3
ITPRIP
ENSSSCG00000010613
ENSG00000148841
Inositol 1,4,5-trisphosphate receptor interacting protein
Tissue enhanced
Detected in many
lymphoid tissue:
39.1
LGR5
ENSSSCG00000030511
ENSG00000139292
Leucine-rich repeat-containing G-protein coupled receptor 5 precursor
Tissue enhanced
Detected in many
skin:
34.4
LHX9
ENSSSCG00000010903
ENSG00000143355
LIM homeobox 9
Tissue enhanced
Detected in some
brain:
30.1
cartilage:
9.3
pineal gland:
12.3
MATN4
ENSSSCG00000007391
ENSG00000124159
Matrilin 4
Tissue enhanced
Detected in many
heart:
27.1
mesothelial tissue:
28.6
MCAM
ENSSSCG00000015116
ENSG00000076706
Melanoma cell adhesion molecule
Low tissue specificity
Detected in many
METTL7B
ENSSSCG00000036547
ENSG00000170439
Methyltransferase like 7B
Tissue enhanced
Detected in many
adipose tissue:
24.8
liver:
64.7
MX2
ENSSSCG00000012076
ENSG00000183486
Interferon-induced GTP-binding protein Mx2
Low tissue specificity
Detected in all
na
ENSSSCG00000003079
ENSG00000073008
Tissue enhanced
Detected in all
cartilage:
35.6
ovary:
35.6
na
ENSSSCG00000015405
ENSG00000135218
Platelet glycoprotein 4
Tissue enhanced
Detected in many
adipose tissue:
146.7
aorta:
64.1
heart:
72.5
skeletal muscle:
63.1
na
ENSSSCG00000022195
Low tissue specificity
Detected in all
na
ENSSSCG00000023012
Tissue enhanced
Detected in many
male glands:
13.1
mesothelial tissue:
14.6
na
ENSSSCG00000028567
ENSG00000165810
Tissue enhanced
Detected in some
adipose tissue:
45.6
aorta:
19.3
bone marrow:
18.2
na
ENSSSCG00000031292
Tissue enhanced
Detected in many
adipose tissue:
141.2
skeletal muscle:
106.3
na
ENSSSCG00000034184
Tissue enhanced
Detected in many
brain:
72.3
synovial tissue:
91.1
na
ENSSSCG00000034917
Low tissue specificity
Detected in all
na
ENSSSCG00000035037
ENSG00000142178
Tissue enhanced
Detected in many
cartilage:
66.5
mesothelial tissue:
63.5
na
ENSSSCG00000035865
ENSG00000145741
Tissue enhanced
Detected in many
cornea:
14.0
mouth:
14.8
na
ENSSSCG00000036782
Low tissue specificity
Detected in many
na
ENSSSCG00000040565
Tissue enhanced
Detected in many
epididymis:
35.6
male glands:
27.9
mesothelial tissue:
20.9
thyroid gland:
18.6
NR4A3
ENSSSCG00000005385
ENSG00000119508
Nuclear receptor subfamily 4 group A member 3
Tissue enhanced
Detected in many
heart:
83.4
male glands:
171.7
OR52W1
ENSSSCG00000035041
ENSG00000175485
Olfactory receptor family 52 subfamily W member 1
Tissue enhanced
Detected in many
cartilage:
11.0
mesothelial tissue:
12.4
OSGIN1
ENSSSCG00000032115
ENSG00000140961
Oxidative stress induced growth inhibitor 1
Tissue enhanced
Detected in many
adrenal gland:
46.7
liver:
67.6
testis:
35.1
PIK3R3
ENSSSCG00000003909
ENSG00000117461
Phosphoinositide-3-kinase regulatory subunit 3
Tissue enhanced
Detected in all
brain:
52.5
PLXNA2
ENSSSCG00000026412
ENSG00000076356
Plexin A2
Low tissue specificity
Detected in many
POU6F2
ENSSSCG00000037764
ENSG00000106536
POU class 6 homeobox 2
Tissue enhanced
Detected in many
cornea:
20.3
testis:
20.1
PRKCH
ENSSSCG00000005095
ENSG00000027075
Protein kinase C eta
Tissue enhanced
Detected in many
mesothelial tissue:
39.3
PRLR
ENSSSCG00000016830
ENSG00000113494
Prolactin receptor precursor
Tissue enhanced
Detected in many
adrenal gland:
51.2
choroid plexus:
87.3
RGS5
ENSSSCG00000037821
ENSG00000143248
Regulator of G-protein signaling 5
Tissue enhanced
Detected in many
cartilage:
142.1
RHBDL3
ENSSSCG00000017734
ENSG00000141314
Rhomboid like 3
Tissue enhanced
Detected in many
retina:
38.4
vagus nerve:
17.0
ROBO4
ENSSSCG00000015203
ENSG00000154133
Roundabout guidance receptor 4
Low tissue specificity
Detected in many
SEMA3F
ENSSSCG00000011398
ENSG00000001617
Semaphorin 3F
Tissue enhanced
Detected in many
mesothelial tissue:
41.2
SEMA7A
ENSSSCG00000023165
ENSG00000138623
Semaphorin 7A (John Milton Hagen blood group)
Tissue enhanced
Detected in many
lymphoid tissue:
35.5
ovary:
49.9
SFRP2
ENSSSCG00000009004
ENSG00000145423
Secreted frizzled-related protein 2 precursor
Tissue enhanced
Detected in many
dura mater:
179.5
retina:
111.4
SIX2
ENSSSCG00000008446
ENSG00000170577
SIX homeobox 2
Tissue enhanced
Detected in many
dura mater:
40.6
salivary gland:
30.5
upper respiratory system:
27.2
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