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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TM4SF4
ENSSSCG00000011703
ENSG00000169903
Transmembrane 4 L six family member 4
Group enriched
Detected in many
gallbladder:
37.6
liver:
42.2
small intestine:
20.8
TM6SF1
ENSSSCG00000001800
ENSG00000136404
Transmembrane 6 superfamily member 1
Low tissue specificity
Detected in many
TM9SF2
ENSSSCG00000031808
ENSG00000125304
Transmembrane 9 superfamily member 2
Tissue enhanced
Detected in all
male glands:
90.5
TM9SF3
ENSSSCG00000010508
ENSG00000077147
Transmembrane 9 superfamily member 3
Tissue enriched
Detected in all
male glands:
158.2
TMA7
ENSSSCG00000011351
ENSG00000232112
Translation machinery associated 7 homolog
Low tissue specificity
Detected in all
TMC5
ENSSSCG00000007868
ENSG00000103534
Transmembrane channel like 5
Tissue enhanced
Detected in some
male glands:
26.2
small intestine:
33.4
stomach:
24.6
upper respiratory system:
34.3
TMCC3
ENSSSCG00000000906
ENSG00000057704
Transmembrane and coiled-coil domain family 3
Tissue enhanced
Detected in all
stomach:
36.3
TMED10
ENSSSCG00000035684
ENSG00000170348
Transmembrane p24 trafficking protein 10
Low tissue specificity
Detected in all
TMED3
ENSSSCG00000001773
ENSG00000166557
Transmembrane emp24 domain-containing protein 3 precursor
Tissue enhanced
Detected in all
male glands:
55.0
ovary:
47.0
TMED7
ENSSSCG00000038156
ENSG00000134970
Transmembrane emp24 domain-containing protein 7 precursor
Low tissue specificity
Detected in all
TMEM104
ENSSSCG00000017230
ENSG00000109066
Transmembrane protein 104
Tissue enhanced
Detected in all
male glands:
34.1
TMEM106B
ENSSSCG00000032740
ENSG00000106460
Transmembrane protein 106B
Low tissue specificity
Detected in all
TMEM123
ENSSSCG00000031170
ENSG00000152558
Transmembrane protein 123
Tissue enhanced
Detected in all
lens:
69.8
lymphoid tissue:
71.9
TMEM126B
ENSSSCG00000014905
ENSG00000171204
Complex I assembly factor TMEM126B, mitochondrial
Low tissue specificity
Detected in all
TMEM128
ENSSSCG00000034122
ENSG00000132406
Transmembrane protein 128
Low tissue specificity
Detected in all
TMEM147
ENSSSCG00000040012
ENSG00000105677
Transmembrane protein 147
Low tissue specificity
Detected in all
TMEM154
ENSSSCG00000009012
ENSG00000170006
Transmembrane protein 154
Tissue enhanced
Detected in many
lymphoid tissue:
26.3
male glands:
49.1
TMEM160
ENSSSCG00000003109
ENSG00000130748
Transmembrane protein 160
Tissue enhanced
Detected in all
brain:
28.4
TMEM167B
ENSSSCG00000037816
ENSG00000215717
Transmembrane protein 167B
Low tissue specificity
Detected in all
TMEM173
ENSSSCG00000014349
ENSG00000184584
Stimulator of interferon genes protein
Low tissue specificity
Detected in all
TMEM184C
ENSSSCG00000030044
ENSG00000164168
Transmembrane protein 184C
Tissue enhanced
Detected in all
lens:
58.1
TMEM19
ENSSSCG00000000510
ENSG00000139291
Transmembrane protein 19
Low tissue specificity
Detected in all
TMEM200C
ENSSSCG00000039627
ENSG00000206432
Transmembrane protein 200C
Tissue enhanced
Detected in many
ductus deferens:
17.8
lens:
27.1
pineal gland:
22.1
TMEM210
ENSSSCG00000031168
ENSG00000185863
Transmembrane protein 210
Group enriched
Detected in many
male glands:
32.4
testis:
72.1
TMEM223
ENSSSCG00000038711
ENSG00000168569
Transmembrane protein 223
Low tissue specificity
Detected in all
TMEM229B
ENSSSCG00000023791
ENSG00000198133
Transmembrane protein 229B
Tissue enhanced
Detected in many
liver:
55.5
TMEM242
ENSSSCG00000004063
ENSG00000215712
Transmembrane protein 242
Low tissue specificity
Detected in all
TMEM251
ENSSSCG00000002458
ENSG00000153485
Transmembrane protein 251
Tissue enhanced
Detected in all
male glands:
39.2
TMEM258
ENSSSCG00000027538
ENSG00000134825
Transmembrane protein 258
Low tissue specificity
Detected in all
TMEM263
ENSSSCG00000038968
ENSG00000151135
Transmembrane protein 263
Tissue enhanced
Detected in all
male glands:
54.9
TMEM267
ENSSSCG00000032979
ENSG00000151881
Transmembrane protein 267
Tissue enhanced
Detected in all
male glands:
20.3
TMEM268
ENSSSCG00000032835
ENSG00000157693
Transmembrane protein 268
Low tissue specificity
Detected in all
TMEM30A
ENSSSCG00000033155
ENSG00000112697
Transmembrane protein 30A
Low tissue specificity
Detected in all
TMEM35B
ENSSSCG00000032660
ENSG00000243749
Transmembrane protein 35B
Tissue enhanced
Detected in all
choroid plexus:
49.6
TMEM41B
ENSSSCG00000014579
ENSG00000166471
Transmembrane protein 41B
Tissue enhanced
Detected in all
male glands:
43.2
TMEM45B
ENSSSCG00000015241
ENSG00000151715
Transmembrane protein 45B
Tissue enhanced
Detected in all
large intestine:
42.3
TMEM50A
ENSSSCG00000024267
ENSG00000183726
Transmembrane protein 50A
Low tissue specificity
Detected in all
TMEM51
ENSSSCG00000021026
ENSG00000171729
Transmembrane protein 51
Low tissue specificity
Detected in all
TMEM59
ENSSSCG00000034261
ENSG00000116209
Transmembrane protein 59
Tissue enhanced
Detected in all
male glands:
89.1
TMEM59L
ENSSSCG00000013911
ENSG00000105696
Transmembrane protein 59-like precursor
Group enriched
Detected in many
brain:
64.7
pineal gland:
64.0
pituitary gland:
19.5
retina:
21.7
TMEM60
ENSSSCG00000038541
ENSG00000135211
Transmembrane protein 60
Low tissue specificity
Detected in all
TMEM68
ENSSSCG00000006252
ENSG00000167904
Transmembrane protein 68
Low tissue specificity
Detected in all
TMEM79
ENSSSCG00000006489
ENSG00000163472
Transmembrane protein 79
Tissue enhanced
Detected in many
male glands:
27.1
stomach:
19.7
TMEM86B
ENSSSCG00000003302
ENSG00000180089
Lysoplasmalogenase
Group enriched
Detected in many
gallbladder:
29.8
liver:
69.9
TMEM87A
ENSSSCG00000004730
ENSG00000103978
Transmembrane protein 87A
Tissue enhanced
Detected in all
male glands:
93.7
TMEM9
ENSSSCG00000027928
ENSG00000116857
Transmembrane protein 9
Low tissue specificity
Detected in many
TMEM98
ENSSSCG00000017727
ENSG00000006042
Transmembrane protein 98
Tissue enhanced
Detected in all
mesothelial tissue:
54.6
TMOD3
ENSSSCG00000004626
ENSG00000138594
Tropomodulin-3
Low tissue specificity
Detected in all
TMPPE
ENSSSCG00000037371
ENSG00000188167
Transmembrane protein with metallophosphoesterase domain
Tissue enhanced
Detected in all
male glands:
42.8
TMSB10
ENSSSCG00000008245
ENSG00000034510
Thymosin beta-10
Low tissue specificity
Detected in all
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