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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NR4A3
ENSSSCG00000005385
ENSG00000119508
Nuclear receptor subfamily 4 group A member 3
Tissue enhanced
Detected in many
heart:
83.4
male glands:
171.7
NRARP
ENSSSCG00000005844
ENSG00000198435
NOTCH regulated ankyrin repeat protein
Tissue enhanced
Detected in all
testis:
90.1
urinary bladder:
83.9
NRAS
ENSSSCG00000032477
GTPase NRas
Low tissue specificity
Detected in all
NRG4
ENSSSCG00000001860
ENSG00000169752
Neuregulin 4
Tissue enhanced
Detected in many
brain:
66.0
male glands:
67.5
NRGN
ENSSSCG00000039322
ENSG00000154146
Neurogranin
Tissue enriched
Detected in many
brain:
320.1
NRP2
ENSSSCG00000026383
ENSG00000118257
Neuropilin 2
Tissue enhanced
Detected in many
smooth muscle:
71.2
NRTN
ENSSSCG00000033413
ENSG00000171119
Neurturin
Tissue enhanced
Detected in many
heart:
19.8
salivary gland:
9.2
NSL1
ENSSSCG00000015593
ENSG00000117697
NSL1, MIS12 kinetochore complex component
Low tissue specificity
Detected in all
NSUN3
ENSSSCG00000027432
ENSG00000178694
NOP2/Sun RNA methyltransferase family member 3
Tissue enhanced
Detected in all
male glands:
24.8
NT5DC1
ENSSSCG00000004435
ENSG00000178425
5'-nucleotidase domain containing 1
Tissue enhanced
Detected in all
large intestine:
34.0
pineal gland:
29.9
NT5DC2
ENSSSCG00000011444
ENSG00000168268
5'-nucleotidase domain containing 2
Tissue enriched
Detected in all
lens:
131.7
NTN5
ENSSSCG00000003146
ENSG00000142233
Netrin 5
Tissue enhanced
Detected in many
male glands:
37.7
NTNG1
ENSSSCG00000006852
ENSG00000162631
Netrin G1
Tissue enhanced
Detected in many
brain:
38.4
retina:
11.0
testis:
11.8
NTRK2
ENSSSCG00000010959
ENSG00000148053
Neurotrophic receptor tyrosine kinase 2
Tissue enhanced
Detected in many
brain:
63.2
cornea:
45.4
NUDCD1
ENSSSCG00000006029
ENSG00000120526
NudC domain containing 1
Low tissue specificity
Detected in all
NUDT12
ENSSSCG00000014187
ENSG00000112874
Nudix hydrolase 12
Low tissue specificity
Detected in all
NUDT19
ENSSSCG00000036294
ENSG00000213965
Nudix hydrolase 19
Low tissue specificity
Detected in all
NUP35
ENSSSCG00000028949
ENSG00000163002
Nucleoporin 35
Low tissue specificity
Detected in all
NUPR1
ENSSSCG00000040162
ENSG00000176046
Nuclear protein 1, transcriptional regulator
Tissue enhanced
Detected in many
kidney:
107.6
liver:
104.2
salivary gland:
176.4
NUS1
ENSSSCG00000020885
ENSG00000153989
NUS1 dehydrodolichyl diphosphate synthase subunit
Low tissue specificity
Detected in all
NWD2
ENSSSCG00000008770
ENSG00000174145
NACHT and WD repeat domain containing 2
Tissue enhanced
Detected in many
brain:
20.4
male glands:
11.4
pituitary gland:
21.0
NXPE4
ENSSSCG00000026203
ENSG00000137634
Neurexophilin and PC-esterase domain family member 4
Tissue enhanced
Detected in many
breast:
18.9
large intestine:
41.3
liver:
19.0
NXPH2
ENSSSCG00000040715
ENSG00000144227
Neurexophilin 2
Tissue enhanced
Detected in many
brain:
10.7
male glands:
16.3
salivary gland:
10.6
upper respiratory system:
9.4
ODC1
ENSSSCG00000027121
ENSG00000115758
Ornithine decarboxylase
Tissue enhanced
Detected in all
endometrium:
92.9
ovary:
68.3
ODF3L2
ENSSSCG00000032811
ENSG00000181781
Outer dense fiber of sperm tails 3 like 2
Tissue enriched
Detected in some
testis:
84.0
OLFM1
ENSSSCG00000029715
ENSG00000130558
Olfactomedin 1
Tissue enhanced
Detected in many
brain:
87.2
lens:
29.0
OLFML2A
ENSSSCG00000005593
ENSG00000185585
Olfactomedin-like protein 2A precursor
Tissue enhanced
Detected in all
salivary gland:
62.3
OLFML2B
ENSSSCG00000006345
ENSG00000162745
Olfactomedin like 2B
Tissue enhanced
Detected in many
smooth muscle:
70.2
ONECUT1
ENSSSCG00000004616
ENSG00000169856
One cut homeobox 1
Group enriched
Detected in many
gallbladder:
33.4
liver:
65.8
OPLAH
ENSSSCG00000005911
ENSG00000178814
5-oxoprolinase, ATP-hydrolysing
Tissue enhanced
Detected in many
male glands:
45.1
salivary gland:
29.5
ORAI2
ENSSSCG00000023912
ENSG00000160991
ORAI calcium release-activated calcium modulator 2
Low tissue specificity
Detected in all
ORC5
ENSSSCG00000015427
ENSG00000164815
Origin recognition complex subunit 5
Low tissue specificity
Detected in all
ORC6
ENSSSCG00000024443
ENSG00000091651
Origin recognition complex subunit 6
Low tissue specificity
Detected in all
OSBPL10
ENSSSCG00000011230
ENSG00000144645
Oxysterol binding protein like 10
Tissue enhanced
Detected in all
testis:
40.0
OSBPL1A
ENSSSCG00000003712
ENSG00000141447
Oxysterol binding protein like 1A
Tissue enhanced
Detected in all
brain:
50.2
lens:
90.9
OSCAR
ENSSSCG00000003259
ENSG00000170909
Osteoclast associated, immunoglobulin-like receptor
Low tissue specificity
Detected in all
OSTC
ENSSSCG00000009145
ENSG00000198856
Oligosaccharyltransferase complex non-catalytic subunit
Tissue enhanced
Detected in all
male glands:
56.6
OSTN
ENSSSCG00000031478
ENSG00000188729
Osteocrin precursor
Tissue enhanced
Detected in all
dura mater:
23.9
OTUD7A
ENSSSCG00000004840
ENSG00000169918
OTU deubiquitinase 7A
Group enriched
Detected in many
brain:
15.3
male glands:
22.8
OXR1
ENSSSCG00000006037
ENSG00000164830
Oxidation resistance 1
Tissue enhanced
Detected in all
brain:
55.0
OXSM
ENSSSCG00000011215
ENSG00000151093
3-oxoacyl-ACP synthase, mitochondrial
Low tissue specificity
Detected in all
P2RX2
ENSSSCG00000009735
ENSG00000187848
Purinergic receptor P2X 2
Tissue enhanced
Detected in many
male glands:
19.7
pituitary gland:
24.4
P2RX7
ENSSSCG00000009817
ENSG00000089041
Purinergic receptor P2X 7
Low tissue specificity
Detected in all
P3H2
ENSSSCG00000011813
ENSG00000090530
Prolyl 3-hydroxylase 2
Tissue enhanced
Detected in many
lens:
66.7
P3H3
ENSSSCG00000000681
ENSG00000110811
Prolyl 3-hydroxylase 3
Tissue enhanced
Detected in many
cartilage:
48.2
P3H4
ENSSSCG00000017429
ENSG00000141696
Prolyl 3-hydroxylase family member 4 (non-enzymatic)
Low tissue specificity
Detected in many
P4HA3
ENSSSCG00000014840
ENSG00000149380
Prolyl 4-hydroxylase subunit alpha 3
Tissue enhanced
Detected in many
cartilage:
54.1
dura mater:
25.6
PAFAH1B2
ENSSSCG00000024027
ENSG00000168092
Platelet activating factor acetylhydrolase 1b catalytic subunit 2
Tissue enhanced
Detected in all
brain:
44.7
PAIP2
ENSSSCG00000026606
ENSG00000120727
Poly(A) binding protein interacting protein 2
Low tissue specificity
Detected in all
PAK3
ENSSSCG00000025306
ENSG00000077264
P21 (RAC1) activated kinase 3
Tissue enhanced
Detected in many
brain:
35.9
ductus deferens:
43.4
male glands:
39.4
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