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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
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Heart
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Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ARHGEF28
ENSSSCG00000028317
ENSG00000214944
Rho guanine nucleotide exchange factor 28
Tissue enhanced
Detected in many
salivary gland:
46.9
ARHGEF38
ENSSSCG00000021764
ENSG00000236699
Rho guanine nucleotide exchange factor 38
Tissue enhanced
Detected in many
epididymis:
22.1
male glands:
29.4
ARHGEF9
ENSSSCG00000012362
ENSG00000131089
Cdc42 guanine nucleotide exchange factor 9
Tissue enhanced
Detected in many
brain:
38.2
pineal gland:
35.1
ARID1A
ENSSSCG00000003559
ENSG00000117713
AT-rich interaction domain 1A
Low tissue specificity
Detected in all
ARID3B
ENSSSCG00000001905
ENSG00000179361
AT-rich interaction domain 3B
Low tissue specificity
Detected in all
ARID5A
ENSSSCG00000008123
ENSG00000196843
AT-rich interaction domain 5A
Low tissue specificity
Detected in many
ARID5B
ENSSSCG00000010219
ENSG00000150347
AT-rich interaction domain 5B
Low tissue specificity
Detected in all
ARL1
ENSSSCG00000000870
ENSG00000120805
ADP ribosylation factor like GTPase 1
Tissue enhanced
Detected in all
male glands:
77.0
ARL4C
ENSSSCG00000034293
ENSG00000188042
ADP-ribosylation factor-like protein 4C
Tissue enriched
Detected in many
ovary:
79.5
ARL5A
ENSSSCG00000031541
ENSG00000162980
ADP ribosylation factor like GTPase 5A
Low tissue specificity
Detected in all
ARL5B
ENSSSCG00000031456
ENSG00000165997
ADP ribosylation factor like GTPase 5B
Low tissue specificity
Detected in all
ARL6IP5
ENSSSCG00000033154
ENSG00000144746
PRA1 family protein 3
Low tissue specificity
Detected in all
ARL9
ENSSSCG00000008899
ENSG00000196503
ADP ribosylation factor like GTPase 9
Tissue enhanced
Detected in all
testis:
53.7
ARMC10
ENSSSCG00000028444
ENSG00000170632
Armadillo repeat-containing protein 10
Tissue enhanced
Detected in all
male glands:
71.9
ARPC2
ENSSSCG00000016185
ENSG00000163466
Actin-related protein 2/3 complex subunit 2
Low tissue specificity
Detected in all
ARPC3
ENSSSCG00000009821
ENSG00000111229
Actin-related protein 2/3 complex subunit 3
Low tissue specificity
Detected in all
ARSE
ENSSSCG00000022129
ENSG00000157399
Arylsulfatase E precursor
Tissue enhanced
Detected in many
cartilage:
24.1
ARSK
ENSSSCG00000014139
ENSG00000164291
Arylsulfatase family member K
Low tissue specificity
Detected in all
ARTN
ENSSSCG00000034778
ENSG00000117407
Artemin
Tissue enhanced
Detected in many
ductus deferens:
7.4
male glands:
11.4
penis:
6.9
ARV1
ENSSSCG00000010179
ENSG00000173409
Protein ARV1
Tissue enhanced
Detected in all
brain:
33.1
ARVCF
ENSSSCG00000010133
ENSG00000099889
ARVCF, delta catenin family member
Tissue enriched
Detected in all
lens:
141.1
ASAH1
ENSSSCG00000006995
ENSG00000104763
N-acylsphingosine amidohydrolase 1
Tissue enhanced
Detected in all
choroid plexus:
100.9
ASAP1
ENSSSCG00000028759
ENSG00000153317
ArfGAP with SH3 domain, ankyrin repeat and PH domain 1
Low tissue specificity
Detected in all
ASCC3
ENSSSCG00000004358
ENSG00000112249
Activating signal cointegrator 1 complex subunit 3
Low tissue specificity
Detected in all
ASGR2
ENSSSCG00000017932
ENSG00000161944
Asialoglycoprotein receptor 2
Tissue enhanced
Detected in many
liver:
68.8
male glands:
21.1
ASNS
ENSSSCG00000015340
ENSG00000070669
Asparagine synthetase
Low tissue specificity
Detected in all
ASNSD1
ENSSSCG00000016041
ENSG00000138381
Asparagine synthetase domain containing 1
Low tissue specificity
Detected in all
ASPH
ENSSSCG00000025087
ENSG00000198363
Aspartate beta-hydroxylase
Tissue enhanced
Detected in all
male glands:
108.5
ASPHD2
ENSSSCG00000009959
ENSG00000128203
Aspartate beta-hydroxylase domain containing 2
Tissue enhanced
Detected in many
brain:
22.6
stomach:
18.2
ATF3
ENSSSCG00000015595
ENSG00000162772
Activating transcription factor 3
Tissue enhanced
Detected in many
aorta:
93.6
ductus deferens:
75.9
ATF4
ENSSSCG00000000084
ENSG00000128272
Cyclic AMP-dependent transcription factor ATF-4
Tissue enhanced
Detected in all
skeletal muscle:
180.7
ATF5
ENSSSCG00000003201
ENSG00000169136
Activating transcription factor 5
Tissue enhanced
Detected in all
lens:
54.3
liver:
130.9
salivary gland:
58.8
ATG4A
ENSSSCG00000012569
ENSG00000101844
Autophagy related 4A cysteine peptidase
Tissue enhanced
Detected in all
male glands:
36.5
ATG5
ENSSSCG00000004370
ENSG00000057663
Autophagy related 5
Low tissue specificity
Detected in all
ATL3
ENSSSCG00000013054
ENSG00000184743
Atlastin GTPase 3
Low tissue specificity
Detected in all
ATOX1
ENSSSCG00000026414
Copper transport protein ATOX1
Tissue enhanced
Detected in all
male glands:
134.0
ATP13A4
ENSSSCG00000011821
ENSG00000127249
ATPase 13A4
Group enriched
Detected in some
ductus deferens:
24.5
epididymis:
62.6
male glands:
70.4
ATP1A1
ENSSSCG00000006740
ENSG00000163399
Sodium/potassium-transporting ATPase subunit alpha-1 precursor
Tissue enhanced
Detected in all
kidney:
127.3
male glands:
141.9
ATP1B1
ENSSSCG00000006296
ENSG00000143153
Sodium/potassium-transporting ATPase subunit beta-1
Tissue enhanced
Detected in all
kidney:
110.2
male glands:
224.2
ATP23
ENSSSCG00000000453
ENSG00000166896
ATP23 metallopeptidase and ATP synthase assembly factor homolog
Low tissue specificity
Detected in all
ATP2A3
ENSSSCG00000017874
ENSG00000074370
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3
Tissue enhanced
Detected in many
salivary gland:
69.7
stomach:
96.5
upper respiratory system:
48.2
ATP2B2
ENSSSCG00000023084
ENSG00000157087
ATPase plasma membrane Ca2+ transporting 2
Group enriched
Detected in some
brain:
74.8
choroid plexus:
38.2
ATP2C2
ENSSSCG00000002671
ENSG00000064270
ATPase secretory pathway Ca2+ transporting 2
Group enriched
Detected in many
esophagus:
42.4
male glands:
129.8
ATP5F1C
ENSSSCG00000034086
ENSG00000165629
ATP synthase F1 subunit gamma
Low tissue specificity
Detected in all
ATP5F1E
ENSSSCG00000007524
ENSG00000124172
ATP synthase subunit epsilon, mitochondrial
Low tissue specificity
Detected in all
ATP5IF1
ENSSSCG00000027072
ENSG00000130770
ATPase inhibitor, mitochondrial
Low tissue specificity
Detected in all
ATP5MC2
ENSSSCG00000033368
ENSG00000135390
ATP synthase membrane subunit c locus 2
Low tissue specificity
Detected in all
ATP5ME
ENSSSCG00000023903
ENSG00000169020
ATP synthase subunit e, mitochondrial
Tissue enhanced
Detected in all
heart:
144.2
ATP5PO
ENSSSCG00000012042
ATP synthase subunit O, mitochondrial precursor
Tissue enhanced
Detected in all
skeletal muscle:
106.3
ATP6
ENSSSCG00000018081
ENSG00000198899
ATP synthase subunit a
Tissue enhanced
Detected in all
heart:
1899.7
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