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Keyword
Chromosome
1
2
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7
8
9
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11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ITGA6
ENSSSCG00000015955
ENSG00000091409
Integrin subunit alpha 6
Low tissue specificity
Detected in all
ITGA8
ENSSSCG00000011046
ENSG00000077943
Integrin subunit alpha 8
Tissue enhanced
Detected in many
cervix:
61.7
endometrium:
34.7
fallopian tube:
40.9
ITGA9
ENSSSCG00000011245
ENSG00000144668
Integrin subunit alpha 9
Tissue enhanced
Detected in many
liver:
66.6
lymphoid tissue:
63.5
ITGAV
ENSSSCG00000016027
ENSG00000138448
Integrin alpha-V precursor
Tissue enhanced
Detected in all
ovary:
65.8
ITGB3
ENSSSCG00000017306
ENSG00000259207
Integrin beta-3 precursor
Tissue enhanced
Detected in all
dura mater:
31.3
ovary:
30.1
ITPK1
ENSSSCG00000002457
ENSG00000100605
Inositol-tetrakisphosphate 1-kinase
Tissue enhanced
Detected in all
stomach:
81.1
ITPKB
ENSSSCG00000040100
ENSG00000143772
Inositol-trisphosphate 3-kinase B
Low tissue specificity
Detected in all
IVD
ENSSSCG00000004774
ENSG00000128928
Isovaleryl-CoA dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
liver:
76.3
IVNS1ABP
ENSSSCG00000015570
ENSG00000116679
Influenza virus NS1A-binding protein
Tissue enhanced
Detected in all
cartilage:
83.1
heart:
87.1
lens:
148.0
IYD
ENSSSCG00000004093
ENSG00000009765
Iodotyrosine deiodinase 1 precursor
Tissue enriched
Detected in many
thyroid gland:
295.1
IZUMO1
ENSSSCG00000003142
ENSG00000182264
Izumo sperm-egg fusion 1
Tissue enhanced
Detected in many
testis:
24.2
JAGN1
ENSSSCG00000032623
ENSG00000171135
Jagunal homolog 1
Low tissue specificity
Detected in all
JAK1
ENSSSCG00000003809
ENSG00000162434
Tyrosine-protein kinase JAK1
Low tissue specificity
Detected in all
JDP2
ENSSSCG00000035895
ENSG00000140044
Jun dimerization protein 2
Low tissue specificity
Detected in many
JKAMP
ENSSSCG00000034798
ENSG00000050130
JNK1/MAPK8 associated membrane protein
Low tissue specificity
Detected in all
JTB
ENSSSCG00000006559
ENSG00000143543
Protein JTB precursor
Low tissue specificity
Detected in all
KANK1
ENSSSCG00000005235
ENSG00000107104
KN motif and ankyrin repeat domains 1
Low tissue specificity
Detected in all
KANSL1L
ENSSSCG00000022830
ENSG00000144445
KAT8 regulatory NSL complex subunit 1 like
Low tissue specificity
Detected in all
KBTBD11
ENSSSCG00000029796
ENSG00000176595
Kelch repeat and BTB domain containing 11
Tissue enhanced
Detected in many
brain:
24.7
kidney:
13.9
KBTBD8
ENSSSCG00000011500
ENSG00000163376
Kelch repeat and BTB domain containing 8
Low tissue specificity
Detected in all
KCNA2
ENSSSCG00000037709
ENSG00000177301
Potassium voltage-gated channel subfamily A member 2
Tissue enhanced
Detected in some
brain:
39.7
choroid plexus:
13.6
retina:
7.8
KCND2
ENSSSCG00000016621
ENSG00000184408
Potassium voltage-gated channel subfamily D member 2
Tissue enriched
Detected in many
brain:
79.7
KCNG3
ENSSSCG00000008465
ENSG00000171126
Potassium voltage-gated channel modifier subfamily G member 3
Tissue enhanced
Detected in many
cornea:
10.3
epididymis:
18.7
male glands:
20.1
KCNJ5
ENSSSCG00000021573
ENSG00000120457
G protein-activated inward rectifier potassium channel 4
Tissue enhanced
Detected in many
adrenal gland:
36.1
epididymis:
18.1
heart:
66.5
KCNK5
ENSSSCG00000025423
ENSG00000164626
Potassium two pore domain channel subfamily K member 5
Tissue enhanced
Detected in many
cartilage:
29.6
kidney:
24.7
KCNK9
ENSSSCG00000033397
ENSG00000169427
Potassium two pore domain channel subfamily K member 9
Group enriched
Detected in some
adrenal gland:
6.8
brain:
18.3
male glands:
15.5
KCNMA1
ENSSSCG00000010325
ENSG00000156113
Calcium-activated potassium channel subunit alpha-1
Tissue enhanced
Detected in many
cervix:
87.5
pineal gland:
73.5
smooth muscle:
70.9
KCNMB1
ENSSSCG00000017005
ENSG00000145936
Potassium calcium-activated channel subfamily M regulatory beta subunit 1
Tissue enhanced
Detected in many
ductus deferens:
58.9
smooth muscle:
109.2
KCNN2
ENSSSCG00000014213
ENSG00000080709
Potassium calcium-activated channel subfamily N member 2
Tissue enhanced
Detected in many
adrenal gland:
33.7
liver:
43.1
male glands:
49.4
KCNU1
ENSSSCG00000029131
ENSG00000215262
Potassium calcium-activated channel subfamily U member 1
Tissue enhanced
Detected in some
heart:
4.5
male glands:
9.2
testis:
24.9
KCTD16
ENSSSCG00000032826
ENSG00000183775
Potassium channel tetramerization domain containing 16
Tissue enhanced
Detected in many
brain:
24.2
choroid plexus:
19.7
male glands:
26.2
salivary gland:
16.0
KCTD17
ENSSSCG00000000135
ENSG00000100379
Potassium channel tetramerization domain containing 17
Tissue enhanced
Detected in many
brain:
47.4
stomach:
34.6
KCTD6
ENSSSCG00000022131
ENSG00000168301
Potassium channel tetramerization domain containing 6
Low tissue specificity
Detected in all
KCTD7
ENSSSCG00000040985
ENSG00000243335
Potassium channel tetramerization domain containing 7
Tissue enhanced
Detected in all
brain:
37.1
epididymis:
44.2
male glands:
49.0
KCTD9
ENSSSCG00000009652
ENSG00000104756
Potassium channel tetramerization domain containing 9
Low tissue specificity
Detected in all
KDELR2
ENSSSCG00000031432
ENSG00000136240
KDEL endoplasmic reticulum protein retention receptor 2
Tissue enhanced
Detected in all
male glands:
91.3
KDELR3
ENSSSCG00000000105
ENSG00000100196
ER lumen protein-retaining receptor 3
Tissue enhanced
Detected in many
male glands:
100.4
KDR
ENSSSCG00000008844
ENSG00000128052
Kinase insert domain receptor
Low tissue specificity
Detected in many
KHDRBS3
ENSSSCG00000005941
ENSG00000131773
KH RNA binding domain containing, signal transduction associated 3
Group enriched
Detected in many
brain:
38.0
testis:
45.1
KIAA0040
ENSSSCG00000040719
ENSG00000235750
KIAA0040
Tissue enhanced
Detected in many
cartilage:
42.1
kidney:
33.7
lymphoid tissue:
35.5
KIAA0408
ENSSSCG00000004215
ENSG00000189367
KIAA0408
Tissue enhanced
Detected in many
brain:
27.5
skeletal muscle:
37.5
smooth muscle:
24.3
KIAA1211L
ENSSSCG00000008187
ENSG00000196872
KIAA1211 like
Tissue enhanced
Detected in many
brain:
34.1
lymphoid tissue:
26.4
KIAA1324
ENSSSCG00000006836
ENSG00000116299
KIAA1324
Tissue enhanced
Detected in many
male glands:
100.4
pituitary gland:
104.7
salivary gland:
32.1
KIAA1324L
ENSSSCG00000015394
ENSG00000164659
KIAA1324 like
Tissue enhanced
Detected in many
brain:
27.0
heart:
18.0
KIAA1549
ENSSSCG00000016513
ENSG00000122778
KIAA1549
Tissue enhanced
Detected in many
cartilage:
35.0
KIAA1755
ENSSSCG00000007344
ENSG00000149633
KIAA1755
Tissue enhanced
Detected in many
dura mater:
21.7
smooth muscle:
25.2
KIAA1958
ENSSSCG00000005469
ENSG00000165185
KIAA1958
Tissue enhanced
Detected in all
retina:
51.1
KIF3A
ENSSSCG00000014283
ENSG00000131437
Kinesin family member 3A
Tissue enhanced
Detected in all
brain:
31.4
KIF5B
ENSSSCG00000011027
ENSG00000170759
Kinesin family member 5B
Low tissue specificity
Detected in all
KIFC2
ENSSSCG00000026924
ENSG00000167702
Kinesin family member C2
Tissue enhanced
Detected in many
skin:
20.4
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