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Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
IFI27L2
ENSSSCG00000002472
ENSG00000119632
Interferon alpha inducible protein 27 like 2
Low tissue specificity
Detected in all
IFIT2
ENSSSCG00000010451
ENSG00000119922
Interferon-induced protein with tetratricopeptide repeats 2
Low tissue specificity
Detected in all
IFIT5
ENSSSCG00000010454
ENSG00000152778
Interferon-induced protein with tetratricopeptide repeats 5
Low tissue specificity
Detected in all
IFITM3
ENSSSCG00000038912
Interferon-induced transmembrane protein 3
Low tissue specificity
Detected in many
IFN-OMEGA-2
ENSSSCG00000033910
Interferon-omega-2
Low tissue specificity
Detected in many
IFNE
ENSSSCG00000005136
ENSG00000184995
Interferon epsilon
Tissue enhanced
Detected in many
skin:
31.1
thyroid gland:
27.4
IGFALS
ENSSSCG00000008013
ENSG00000099769
Insulin-like growth factor-binding protein complex acid labile subunit precursor
Tissue enriched
Detected in many
liver:
47.0
IGFBP5
ENSSSCG00000025924
ENSG00000115461
Insulin-like growth factor-binding protein 5 precursor
Tissue enhanced
Detected in all
cartilage:
254.5
cervix:
156.6
IKBIP
ENSSSCG00000038772
ENSG00000166130
Inhibitor of nuclear factor kappa-B kinase-interacting protein
Low tissue specificity
Detected in all
IL13RA1
ENSSSCG00000012633
ENSG00000131724
Interleukin-13 receptor subunit alpha-1 precursor
Low tissue specificity
Detected in many
IL15
ENSSSCG00000009051
ENSG00000164136
Interleukin-15 precursor
Tissue enhanced
Detected in many
choroid plexus:
25.5
male glands:
26.7
IL17B
ENSSSCG00000014434
ENSG00000127743
Interleukin 17B
Tissue enhanced
Detected in many
cartilage:
51.8
male glands:
48.2
IL17F
ENSSSCG00000001749
ENSG00000112116
Interleukin 17F
Low tissue specificity
Detected in all
IL17RD
ENSSSCG00000011463
ENSG00000144730
Interleukin 17 receptor D
Tissue enhanced
Detected in many
pituitary gland:
26.0
IL1R1
ENSSSCG00000008162
ENSG00000115594
Interleukin 1 receptor type 1
Tissue enhanced
Detected in all
liver:
74.2
IL1RAP
ENSSSCG00000021206
ENSG00000196083
Interleukin 1 receptor accessory protein
Tissue enhanced
Detected in all
liver:
31.1
IL25
ENSSSCG00000028427
ENSG00000166090
Interleukin 25
Tissue enhanced
Detected in many
breast:
16.9
heart:
19.1
IL27RA
ENSSSCG00000013766
ENSG00000104998
Interleukin-27 receptor subunit alpha precursor
Tissue enhanced
Detected in many
lymphoid tissue:
36.5
ovary:
26.3
IL31RA
ENSSSCG00000016915
ENSG00000164509
Interleukin 31 receptor A
Tissue enhanced
Detected in some
male glands:
22.8
IL4R
ENSSSCG00000007817
ENSG00000077238
Interleukin-4 receptor subunit alpha precursor
Low tissue specificity
Detected in many
IL6ST
ENSSSCG00000016916
ENSG00000134352
Interleukin-6 receptor subunit beta precursor
Low tissue specificity
Detected in all
IL9R
ENSSSCG00000007973
ENSG00000124334
Interleukin 9 receptor
Tissue enhanced
Detected in many
epididymis:
12.4
male glands:
18.2
ILF2
ENSSSCG00000028553
ENSG00000143621
Interleukin enhancer binding factor 2
Low tissue specificity
Detected in all
IMPA1
ENSSSCG00000033791
ENSG00000133731
Inositol monophosphatase 1
Low tissue specificity
Detected in all
IMPACT
ENSSSCG00000003713
ENSG00000154059
Impact RWD domain protein
Low tissue specificity
Detected in all
IMPAD1
ENSSSCG00000032846
ENSG00000104331
Inositol monophosphatase 3
Low tissue specificity
Detected in all
INAVA
ENSSSCG00000032735
ENSG00000163362
Innate immunity activator
Tissue enhanced
Detected in many
skin:
23.2
stomach:
49.7
INHBA
ENSSSCG00000035077
ENSG00000122641
Inhibin beta A chain
Group enriched
Detected in many
cartilage:
119.6
ovary:
55.3
INMT
ENSSSCG00000016676
Indolethylamine N-methyltransferase
Tissue enriched
Detected in many
liver:
77.9
INPP4A
ENSSSCG00000008190
ENSG00000040933
Type I inositol 3,4-bisphosphate 4-phosphatase
Tissue enhanced
Detected in all
lymphoid tissue:
51.4
INPP4B
ENSSSCG00000009050
ENSG00000109452
Inositol polyphosphate-4-phosphatase type II B
Low tissue specificity
Detected in all
INPP5D
ENSSSCG00000016298
ENSG00000168918
Inositol polyphosphate-5-phosphatase D
Tissue enhanced
Detected in many
lymphoid tissue:
54.2
INPP5E
ENSSSCG00000040869
ENSG00000148384
Inositol polyphosphate-5-phosphatase E
Low tissue specificity
Detected in all
INPP5J
ENSSSCG00000030345
ENSG00000185133
Inositol polyphosphate-5-phosphatase J
Tissue enhanced
Detected in many
brain:
29.6
stomach:
22.1
IPO11
ENSSSCG00000016938
ENSG00000086200
Importin 11
Low tissue specificity
Detected in all
IPO5
ENSSSCG00000009509
ENSG00000065150
Importin-5
Tissue enhanced
Detected in all
lens:
96.8
testis:
62.7
IPO7
ENSSSCG00000028886
ENSG00000205339
Importin 7
Low tissue specificity
Detected in all
IQANK1
ENSSSCG00000034987
ENSG00000203499
IQ motif and ankyrin repeat containing 1
Tissue enhanced
Detected in many
cartilage:
18.5
epididymis:
14.0
IQCF1
ENSSSCG00000029827
ENSG00000173389
IQ motif containing F1
Tissue enriched
Detected in many
testis:
75.6
IQUB
ENSSSCG00000016608
ENSG00000164675
IQ motif and ubiquitin domain containing
Tissue enhanced
Detected in many
fallopian tube:
42.3
testis:
27.4
IREB2
ENSSSCG00000001756
ENSG00000136381
Iron-responsive element-binding protein 2
Low tissue specificity
Detected in all
IRF8
ENSSSCG00000034980
ENSG00000140968
Interferon regulatory factor 8
Tissue enhanced
Detected in many
lymphoid tissue:
48.4
stomach:
28.9
IRX3
ENSSSCG00000002831
ENSG00000177508
Iroquois homeobox 3
Tissue enhanced
Detected in many
breast:
24.6
male glands:
63.3
IRX5
ENSSSCG00000032145
ENSG00000176842
Iroquois homeobox 5
Tissue enhanced
Detected in many
breast:
32.9
male glands:
51.4
ISG12(A)
ENSSSCG00000035297
ENSG00000165949
Uncharacterized protein LOC100153902
Low tissue specificity
Detected in all
ISL1
ENSSSCG00000016883
ENSG00000016082
ISL LIM homeobox 1
Tissue enhanced
Detected in many
male glands:
16.6
penis:
36.4
ISL2
ENSSSCG00000033348
ENSG00000159556
ISL LIM homeobox 2
Group enriched
Detected in some
penis:
20.6
pineal gland:
42.3
ISOC1
ENSSSCG00000014258
ENSG00000066583
Isochorismatase domain containing 1
Tissue enhanced
Detected in all
male glands:
35.7
ITGA1
ENSSSCG00000016885
ENSG00000213949
Integrin subunit alpha 1
Tissue enhanced
Detected in many
cartilage:
56.4
smooth muscle:
85.1
ITGA5
ENSSSCG00000000293
ENSG00000161638
Integrin subunit alpha 5
Tissue enhanced
Detected in many
ovary:
54.9
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