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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ADGRA1
ENSSSCG00000039199
ENSG00000197177
Adhesion G protein-coupled receptor A1
Tissue enhanced
Detected in many
male glands:
31.0
ADGRD1
ENSSSCG00000009745
ENSG00000111452
Adhesion G protein-coupled receptor D1
Tissue enhanced
Detected in many
mesothelial tissue:
53.9
ADGRF1
ENSSSCG00000001726
ENSG00000153292
Adhesion G-protein coupled receptor F1 precursor
Tissue enhanced
Detected in all
male glands:
54.4
ADH5
ENSSSCG00000009185
ENSG00000197894
Alcohol dehydrogenase class-3
Low tissue specificity
Detected in all
ADI1
ENSSSCG00000029161
ENSG00000182551
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
Tissue enhanced
Detected in all
male glands:
66.8
ADIRF
ENSSSCG00000037918
ENSG00000148671
Adipogenesis regulatory factor
Group enriched
Detected in many
adipose tissue:
186.4
cornea:
417.2
penis:
193.0
ADORA1
ENSSSCG00000021059
ENSG00000163485
Adenosine receptor A1
Tissue enhanced
Detected in many
adipose tissue:
21.7
brain:
24.7
male glands:
44.1
ADRA1A
ENSSSCG00000009661
ENSG00000120907
Alpha-1A adrenergic receptor
Tissue enhanced
Detected in many
liver:
72.1
ADRA1D
ENSSSCG00000007139
ENSG00000171873
Alpha-1D adrenergic receptor
Tissue enhanced
Detected in many
brain:
11.8
ductus deferens:
12.7
male glands:
12.9
ADRA2A
ENSSSCG00000010629
ENSG00000150594
Alpha-2A adrenergic receptor
Tissue enhanced
Detected in many
gallbladder:
51.0
stomach:
34.8
ADRA2C
ENSSSCG00000008703
ENSG00000184160
Adrenoceptor alpha 2C
Tissue enhanced
Detected in many
brain:
28.9
penis:
24.3
ADRB1
ENSSSCG00000010647
ENSG00000043591
Beta-1 adrenergic receptor
Tissue enhanced
Detected in many
cartilage:
21.2
heart:
30.9
lymphoid tissue:
27.4
male glands:
54.3
ADRB2
ENSSSCG00000038598
ENSG00000169252
Beta-2 adrenergic receptor
Low tissue specificity
Detected in many
AFF1
ENSSSCG00000023593
ENSG00000172493
AF4/FMR2 family member 1
Low tissue specificity
Detected in all
AFF2
ENSSSCG00000012730
ENSG00000155966
AF4/FMR2 family member 2
Tissue enhanced
Detected in many
epididymis:
37.8
male glands:
53.3
AGAP1
ENSSSCG00000016317
ENSG00000157985
ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
Low tissue specificity
Detected in all
AGBL5
ENSSSCG00000008558
ENSG00000084693
ATP/GTP binding protein like 5
Tissue enriched
Detected in all
testis:
123.7
AGMO
ENSSSCG00000015356
ENSG00000187546
Alkylglycerol monooxygenase
Tissue enhanced
Detected in some
brain:
10.3
lens:
16.9
liver:
57.3
AGPAT5
ENSSSCG00000015755
ENSG00000155189
1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon
Low tissue specificity
Detected in all
AGR2
ENSSSCG00000015363
ENSG00000106541
Anterior gradient protein 2 homolog precursor
Tissue enriched
Detected in many
male glands:
443.2
AGT
ENSSSCG00000010184
ENSG00000135744
Angiotensinogen
Tissue enhanced
Detected in many
adipose tissue:
99.8
brain:
96.0
liver:
70.3
AIF1L
ENSSSCG00000034178
ENSG00000126878
Allograft inflammatory factor 1 like
Tissue enhanced
Detected in many
brain:
93.1
cartilage:
55.4
vagus nerve:
51.7
AIPL1
ENSSSCG00000022026
ENSG00000129221
Aryl hydrocarbon receptor interacting protein like 1
Tissue enriched
Detected in some
retina:
79.2
AKAIN1
ENSSSCG00000038232
ENSG00000231824
A-kinase anchor inhibitor 1
Tissue enhanced
Detected in all
adrenal gland:
38.5
pituitary gland:
39.9
AKAP5
ENSSSCG00000002268
ENSG00000179841
A-kinase anchoring protein 5
Tissue enriched
Detected in many
brain:
44.5
AKR1A1
ENSSSCG00000029256
ENSG00000117448
Alcohol dehydrogenase
Low tissue specificity
Detected in all
AKR1B1
ENSSSCG00000040608
ENSG00000085662
Aldose reductase
Tissue enhanced
Detected in all
kidney:
55.9
lens:
113.2
male glands:
56.6
AKT3
ENSSSCG00000010872
ENSG00000117020
RAC-gamma serine/threonine-protein kinase
Low tissue specificity
Detected in all
AKTIP
ENSSSCG00000026181
ENSG00000166971
AKT-interacting protein
Low tissue specificity
Detected in all
ALDH18A1
ENSSSCG00000010495
ENSG00000059573
Aldehyde dehydrogenase 18 family member A1
Tissue enhanced
Detected in many
male glands:
70.8
ALDH1A1
ENSSSCG00000028996
ENSG00000165092
Aldehyde dehydrogenase 1 family member A1
Tissue enhanced
Detected in many
lens:
147.3
liver:
94.7
ALDH1L1
ENSSSCG00000030626
ENSG00000144908
Cytosolic 10-formyltetrahydrofolate dehydrogenase
Group enriched
Detected in many
kidney:
42.9
liver:
148.3
ALDH1L2
ENSSSCG00000000839
ENSG00000136010
Aldehyde dehydrogenase 1 family member L2
Low tissue specificity
Detected in all
ALDH2
ENSSSCG00000009889
ENSG00000111275
Aldehyde dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
liver:
117.1
ALDH3B2
ENSSSCG00000026349
ENSG00000132746
Aldehyde dehydrogenase 3 family member B2
Tissue enhanced
Detected in many
mouth:
13.0
skin:
48.0
ALDH9A1
ENSSSCG00000006324
ENSG00000143149
Aldehyde dehydrogenase 9 family member A1
Tissue enhanced
Detected in all
liver:
69.0
ALDOC
ENSSSCG00000017759
ENSG00000109107
Fructose-bisphosphate aldolase C
Tissue enhanced
Detected in many
adipose tissue:
85.9
brain:
145.7
pineal gland:
49.1
retina:
64.5
ALG2
ENSSSCG00000005383
ENSG00000119523
Alpha-1,3/1,6-mannosyltransferase ALG2
Tissue enriched
Detected in all
male glands:
68.2
ALG5
ENSSSCG00000009360
ENSG00000120697
Dolichyl-phosphate beta-glucosyltransferase
Tissue enhanced
Detected in all
male glands:
55.4
ALG6
ENSSSCG00000003815
ENSG00000088035
ALG6, alpha-1,3-glucosyltransferase
Low tissue specificity
Detected in all
ALOX5AP
ENSSSCG00000009330
ENSG00000132965
Arachidonate 5-lipoxygenase-activating protein precursor
Tissue enhanced
Detected in many
brain:
30.0
testis:
30.4
ALS2CL
ENSSSCG00000021997
ENSG00000178038
ALS2 C-terminal like
Low tissue specificity
Detected in many
AMDHD1
ENSSSCG00000000893
ENSG00000139344
Amidohydrolase domain containing 1
Tissue enriched
Detected in many
liver:
83.9
AMER2
ENSSSCG00000022678
ENSG00000165566
APC membrane recruitment protein 2
Tissue enhanced
Detected in many
brain:
45.6
male glands:
11.6
pineal gland:
10.3
AMIGO2
ENSSSCG00000000810
ENSG00000139211
Adhesion molecule with Ig like domain 2
Tissue enhanced
Detected in many
ovary:
33.6
AMOT
ENSSSCG00000012591
ENSG00000126016
Angiomotin
Tissue enhanced
Detected in all
epididymis:
59.2
male glands:
93.4
skeletal muscle:
52.8
AMT
ENSSSCG00000022975
ENSG00000145020
Aminomethyltransferase, mitochondrial
Tissue enhanced
Detected in many
lens:
24.0
liver:
17.8
ANAPC13
ENSSSCG00000033057
ENSG00000129055
Anaphase-promoting complex subunit 13
Tissue enhanced
Detected in all
lens:
87.0
ANG
ENSSSCG00000031538
ENSG00000214274
Angiogenin
Tissue enhanced
Detected in many
liver:
105.2
ANKEF1
ENSSSCG00000007063
ENSG00000132623
Ankyrin repeat and EF-hand domain containing 1
Tissue enhanced
Detected in some
male glands:
18.0
testis:
35.6
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