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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
A2M
ENSSSCG00000000660
ENSG00000175899
Alpha-2-macroglobulin
Tissue enhanced
Detected in many
adrenal gland:
238.9
liver:
109.4
testis:
79.2
AAK1
ENSSSCG00000008337
ENSG00000115977
AP2-associated protein kinase 1
Low tissue specificity
Detected in all
AATK
ENSSSCG00000017141
ENSG00000181409
Apoptosis associated tyrosine kinase
Group enriched
Detected in many
brain:
26.3
vagus nerve:
92.2
ABCA3
ENSSSCG00000008051
ENSG00000167972
ATP binding cassette subfamily A member 3
Tissue enhanced
Detected in all
lung:
28.6
ABCA5
ENSSSCG00000017255
ENSG00000154265
ATP binding cassette subfamily A member 5
Tissue enhanced
Detected in all
epididymis:
39.2
ABCA7
ENSSSCG00000023121
ENSG00000064687
ATP binding cassette subfamily A member 7
Tissue enhanced
Detected in many
lymphoid tissue:
29.4
ABCA8
ENSSSCG00000026473
ENSG00000141338
ATP binding cassette subfamily A member 8
Tissue enhanced
Detected in many
liver:
61.6
vagus nerve:
33.1
ABCC3
ENSSSCG00000017561
ENSG00000108846
ATP binding cassette subfamily C member 3
Tissue enhanced
Detected in many
epididymis:
30.2
male glands:
39.6
ABCG1
ENSSSCG00000027745
ENSG00000160179
ATP binding cassette subfamily G member 1
Low tissue specificity
Detected in many
ABHD12B
ENSSSCG00000005023
ENSG00000131969
Abhydrolase domain containing 12B
Low tissue specificity
Detected in all
ABHD17C
ENSSSCG00000001782
ENSG00000136379
Abhydrolase domain containing 17C
Tissue enhanced
Detected in many
large intestine:
39.8
male glands:
50.9
ABHD2
ENSSSCG00000001835
ENSG00000140526
Abhydrolase domain containing 2
Tissue enhanced
Detected in all
choroid plexus:
63.3
ABHD5
ENSSSCG00000011297
ENSG00000011198
1-acylglycerol-3-phosphate O-acyltransferase ABHD5
Low tissue specificity
Detected in all
ABHD6
ENSSSCG00000011470
ENSG00000163686
Abhydrolase domain containing 6
Tissue enhanced
Detected in many
choroid plexus:
34.9
pineal gland:
33.7
ABI2
ENSSSCG00000034630
ENSG00000138443
Abl interactor 2
Tissue enhanced
Detected in many
brain:
29.8
lens:
41.1
ABRA
ENSSSCG00000031728
ENSG00000174429
Actin-binding Rho-activating protein
Group enriched
Detected in many
heart:
32.7
skeletal muscle:
59.6
ACACB
ENSSSCG00000009937
ENSG00000076555
Acetyl-CoA carboxylase 2 precursor
Tissue enhanced
Detected in many
heart:
31.7
male glands:
64.1
salivary gland:
45.8
skeletal muscle:
31.3
ACADL
ENSSSCG00000016156
ENSG00000115361
Long-chain specific acyl-CoA dehydrogenase, mitochondrial
Tissue enhanced
Detected in many
heart:
42.2
skeletal muscle:
44.2
ACADM
ENSSSCG00000003776
ENSG00000117054
Medium-chain specific acyl-CoA dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
heart:
61.2
skeletal muscle:
88.4
ACAP2
ENSSSCG00000031147
ENSG00000114331
ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
Low tissue specificity
Detected in all
ACAT1
ENSSSCG00000026153
ENSG00000075239
Acetyl-CoA acetyltransferase 1
Tissue enhanced
Detected in all
skeletal muscle:
70.4
ACCS
ENSSSCG00000013282
ENSG00000110455
1-aminocyclopropane-1-carboxylate synthase homolog (inactive)
Low tissue specificity
Detected in all
ACER2
ENSSSCG00000034213
ENSG00000177076
Alkaline ceramidase 2
Tissue enhanced
Detected in many
adipose tissue:
35.7
male glands:
43.4
ACOT11
ENSSSCG00000037559
ENSG00000162390
Acyl-CoA thioesterase 11
Low tissue specificity
Detected in many
ACOT9
ENSSSCG00000012172
ENSG00000123130
Acyl-CoA thioesterase 9
Low tissue specificity
Detected in all
ACP1
ENSSSCG00000008659
ENSG00000143727
Low molecular weight phosphotyrosine protein phosphatase
Low tissue specificity
Detected in all
ACP5
ENSSSCG00000032282
ENSG00000102575
Tartrate-resistant acid phosphatase type 5
Tissue enhanced
Detected in all
bone marrow:
45.5
dura mater:
103.0
ACSL1
ENSSSCG00000015784
ENSG00000151726
Long-chain-fatty-acid--CoA ligase 1
Tissue enhanced
Detected in all
liver:
113.3
skeletal muscle:
63.6
ACSL3
ENSSSCG00000016223
ENSG00000123983
Long-chain-fatty-acid--CoA ligase 3
Tissue enriched
Detected in all
male glands:
126.7
ACSL5
ENSSSCG00000031789
ENSG00000197142
Long-chain-fatty-acid--CoA ligase 5
Low tissue specificity
Detected in many
ACSM5
ENSSSCG00000026453
ENSG00000183549
Acyl-CoA synthetase medium chain family member 5
Low tissue specificity
Detected in all
ACTA2
ENSSSCG00000010447
ENSG00000107796
Actin, aortic smooth muscle
Tissue enhanced
Detected in many
ductus deferens:
294.9
endometrium:
265.1
penis:
206.0
ACTG2
ENSSSCG00000008294
ENSG00000163017
Actin, gamma 2, smooth muscle, enteric
Tissue enriched
Detected in many
smooth muscle:
747.6
ACTR10
ENSSSCG00000022299
ENSG00000131966
Actin related protein 10 homolog
Tissue enhanced
Detected in all
male glands:
84.2
ACTR2
ENSSSCG00000008358
ENSG00000138071
Actin-related protein 2
Low tissue specificity
Detected in all
ACTR3
ENSSSCG00000015710
ENSG00000115091
Actin-related protein 3
Low tissue specificity
Detected in all
ACVRL1
ENSSSCG00000000232
ENSG00000139567
Activin A receptor like type 1
Low tissue specificity
Detected in many
ADA
ENSSSCG00000021255
ENSG00000196839
Adenosine deaminase
Tissue enhanced
Detected in many
mouth:
124.3
small intestine:
43.7
stomach:
31.6
ADAM12
ENSSSCG00000010746
ENSG00000148848
ADAM metallopeptidase domain 12
Tissue enhanced
Detected in many
ovary:
64.8
ADAM28
ENSSSCG00000009644
ENSG00000042980
ADAM metallopeptidase domain 28
Tissue enhanced
Detected in all
epididymis:
81.1
urinary bladder:
46.5
ADAM29
ENSSSCG00000009697
ENSG00000168594
ADAM metallopeptidase domain 29
Group enriched
Detected in some
epididymis:
25.8
male glands:
23.2
testis:
32.5
ADAMTS17
ENSSSCG00000038452
ENSG00000140470
ADAM metallopeptidase with thrombospondin type 1 motif 17
Tissue enriched
Detected in many
lens:
63.4
ADAP1
ENSSSCG00000007547
ENSG00000105963
Arf-GAP with dual PH domain-containing protein 1
Tissue enhanced
Detected in many
brain:
45.0
stomach:
22.4
ADAP2
ENSSSCG00000017738
ENSG00000184060
Arf-GAP with dual PH domain-containing protein 2
Low tissue specificity
Detected in all
ADARB2
ENSSSCG00000011160
ENSG00000185736
Adenosine deaminase, RNA specific B2 (inactive)
Tissue enhanced
Detected in many
brain:
20.3
male glands:
16.5
ADCK5
ENSSSCG00000005907
ENSG00000173137
AarF domain containing kinase 5
Tissue enhanced
Detected in all
epididymis:
47.5
ADCY1
ENSSSCG00000016726
ENSG00000164742
Adenylate cyclase 1
Group enriched
Detected in some
brain:
51.5
lens:
21.6
retina:
23.4
ADCY9
ENSSSCG00000007950
ENSG00000162104
Adenylate cyclase 9
Low tissue specificity
Detected in all
ADCYAP1R1
ENSSSCG00000016672
ENSG00000078549
Pituitary adenylate cyclase-activating polypeptide type I receptor precursor
Group enriched
Detected in many
brain:
32.6
choroid plexus:
19.4
heart:
36.6
male glands:
36.8
ADD3
ENSSSCG00000010621
ENSG00000148700
Adducin 3
Low tissue specificity
Detected in all
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