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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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1362 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MTHFD1L
ENSSSCG00000004092
ENSG00000120254
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like
Tissue enhanced
Detected in many
epididymis:
39.7
lens:
35.0
MTHFD2L
ENSSSCG00000008961
ENSG00000163738
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like
Low tissue specificity
Detected in many
MTSS1
ENSSSCG00000005975
ENSG00000170873
MTSS1, I-BAR domain containing
Low tissue specificity
Detected in all
MX2
ENSSSCG00000012076
ENSG00000183486
Interferon-induced GTP-binding protein Mx2
Low tissue specificity
Detected in all
MYC
ENSSSCG00000005965
ENSG00000136997
Myc proto-oncogene protein
Tissue enhanced
Detected in many
mesothelial tissue:
87.7
MYCT1
ENSSSCG00000031536
ENSG00000120279
MYC target 1
Low tissue specificity
Detected in many
MYH11
ENSSSCG00000000146
ENSG00000133392
Myosin heavy chain 11
Tissue enhanced
Detected in many
ductus deferens:
178.9
smooth muscle:
565.6
urinary bladder:
187.5
MYL10
ENSSSCG00000007680
ENSG00000106436
Myosin light chain 10
Group enriched
Detected in some
cartilage:
8.6
lens:
21.4
synovial tissue:
7.9
MYL9
ENSSSCG00000036402
ENSG00000101335
Myosin regulatory light polypeptide 9
Tissue enhanced
Detected in many
smooth muscle:
241.8
urinary bladder:
100.0
MYLK
ENSSSCG00000011867
ENSG00000065534
Myosin light chain kinase
Tissue enhanced
Detected in many
ductus deferens:
164.5
endometrium:
133.8
smooth muscle:
313.8
MYMK
ENSSSCG00000022891
ENSG00000187616
Myomaker, myoblast fusion factor
Tissue enhanced
Detected in many
heart:
28.3
liver:
14.1
MYO1D
ENSSSCG00000017728
ENSG00000176658
Myosin ID
Tissue enhanced
Detected in many
cartilage:
55.8
MYOC
ENSSSCG00000035066
ENSG00000034971
Myocilin precursor
Tissue enhanced
Detected in many
adipose tissue:
25.0
aorta:
25.1
cartilage:
31.5
penis:
25.0
MYOM1
ENSSSCG00000003693
ENSG00000101605
Myomesin 1
Group enriched
Detected in many
heart:
71.8
skeletal muscle:
130.9
MYRIP
ENSSSCG00000011269
ENSG00000170011
Rab effector MyRIP
Tissue enhanced
Detected in many
male glands:
35.2
MYZAP
ENSSSCG00000004598
ENSG00000263155
Myocardial zonula adherens protein
Tissue enriched
Detected in many
heart:
68.8
N4BP3
ENSSSCG00000014034
ENSG00000145911
NEDD4 binding protein 3
Low tissue specificity
Detected in many
na
ENSSSCG00000000089
Low tissue specificity
Detected in all
na
ENSSSCG00000000657
Tissue enhanced
Detected in many
large intestine:
62.2
lymphoid tissue:
54.2
na
ENSSSCG00000000734
ENSG00000110900
Low tissue specificity
Detected in all
na
ENSSSCG00000000759
Tissue enriched
Detected in many
lens:
87.5
na
ENSSSCG00000000849
Endoplasmin precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000001455
MHC class II histocompatibility antigen SLA-DRB1 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
150.5
na
ENSSSCG00000001456
ENSG00000196735
SLA class II histocompatibility antigen, DQ haplotype D alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
163.6
na
ENSSSCG00000001500
ENSG00000124749
Tissue enhanced
Detected in many
ductus deferens:
35.8
penis:
26.8
na
ENSSSCG00000001725
ENSG00000069122
Tissue enhanced
Detected in many
adipose tissue:
60.7
na
ENSSSCG00000002440
ENSG00000015133
Tissue enhanced
Detected in many
stomach:
46.9
na
ENSSSCG00000002708
ENSG00000205084
Low tissue specificity
Detected in all
na
ENSSSCG00000002941
Tissue enhanced
Detected in all
epididymis:
41.6
na
ENSSSCG00000002997
ENSG00000261857
Tissue enriched
Detected in some
cartilage:
161.2
na
ENSSSCG00000003079
ENSG00000073008
Tissue enhanced
Detected in all
cartilage:
35.6
ovary:
35.6
na
ENSSSCG00000003326
ENSG00000198300
Tissue enhanced
Detected in all
brain:
42.8
kidney:
27.9
pituitary gland:
36.3
na
ENSSSCG00000003868
Low tissue specificity
Detected in all
na
ENSSSCG00000003935
ENSG00000117419
Tissue enhanced
Detected in many
brain:
19.5
cartilage:
27.1
pineal gland:
17.9
retina:
14.8
na
ENSSSCG00000004081
Tissue enhanced
Detected in many
brain:
60.3
na
ENSSSCG00000004274
ENSG00000112280
Tissue enriched
Detected in some
cartilage:
165.0
na
ENSSSCG00000004441
ENSG00000111817
Tissue enhanced
Detected in many
cartilage:
62.7
na
ENSSSCG00000004445
ENSG00000164451
Tissue enriched
Detected in all
skin:
41.7
na
ENSSSCG00000004594
Low tissue specificity
Detected in all
na
ENSSSCG00000004666
ENSG00000137767,ENSG00000260170
Sulfide:quinone oxidoreductase, mitochondrial
Tissue enhanced
Detected in all
large intestine:
94.8
na
ENSSSCG00000004921
ENSG00000081923
Low tissue specificity
Detected in many
na
ENSSSCG00000005278
Tissue enhanced
Detected in many
smooth muscle:
96.0
na
ENSSSCG00000005457
ENSG00000198121
Lysophosphatidic acid receptor 1
Tissue enhanced
Detected in many
brain:
47.5
cartilage:
77.7
na
ENSSSCG00000005480
Low tissue specificity
Detected in many
na
ENSSSCG00000005481
ENSG00000138835
Tissue enhanced
Detected in many
cartilage:
62.7
na
ENSSSCG00000005518
N-acetyllactosaminide alpha-1,3-galactosyltransferase
Low tissue specificity
Detected in many
na
ENSSSCG00000006050
Low tissue specificity
Detected in all
na
ENSSSCG00000006156
ENSG00000076554
Tumor protein D52
Tissue enhanced
Detected in all
male glands:
68.9
na
ENSSSCG00000006286
ENSG00000007908
Tissue enhanced
Detected in many
cartilage:
44.6
dura mater:
17.2
na
ENSSSCG00000006344
ENSG00000254706
Tissue enhanced
Detected in many
cartilage:
108.3
male glands:
71.2
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