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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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382 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PRKCB
ENSSSCG00000033674
ENSG00000166501
Protein kinase C beta
Tissue enhanced
Detected in many
brain:
61.4
PRKCZ
ENSSSCG00000030361
ENSG00000067606
Protein kinase C zeta type
Tissue enhanced
Detected in many
brain:
43.5
PRR15L
ENSSSCG00000024743
ENSG00000167183
Proline rich 15 like
Tissue enhanced
Detected in many
large intestine:
88.9
male glands:
109.6
PRRX1
ENSSSCG00000031503
ENSG00000116132
Paired related homeobox 1
Tissue enhanced
Detected in many
cervix:
63.8
dura mater:
70.7
PTGFR
ENSSSCG00000039548
ENSG00000122420
Prostaglandin F2-alpha receptor
Tissue enhanced
Detected in many
bone marrow:
26.3
dura mater:
25.4
ovary:
81.5
PTPRCAP
ENSSSCG00000012909
ENSG00000213402
Protein tyrosine phosphatase, receptor type C associated protein
Tissue enhanced
Detected in many
lung:
35.4
lymphoid tissue:
108.0
small intestine:
39.3
upper respiratory system:
46.9
PTPRD
ENSSSCG00000005194
ENSG00000153707
Protein tyrosine phosphatase, receptor type D
Tissue enhanced
Detected in many
brain:
50.8
cartilage:
34.8
kidney:
38.0
PTPRQ
ENSSSCG00000031716
ENSG00000139304
Protein tyrosine phosphatase, receptor type Q
Tissue enhanced
Detected in some
choroid plexus:
37.4
kidney:
21.3
mesothelial tissue:
74.0
RARRES2
ENSSSCG00000035419
ENSG00000106538
Retinoic acid receptor responder protein 2 precursor
Tissue enhanced
Detected in all
kidney:
123.4
liver:
125.8
RASSF8
ENSSSCG00000000559
ENSG00000123094
Ras association domain family member 8
Low tissue specificity
Detected in all
RBP1
ENSSSCG00000011664
ENSG00000114115
Retinol-binding protein 1
Tissue enhanced
Detected in many
choroid plexus:
50.2
cornea:
58.8
RDH5
ENSSSCG00000000362
ENSG00000135437
Retinol dehydrogenase 5
Tissue enhanced
Detected in many
adipose tissue:
26.7
aorta:
30.2
brain:
23.6
choroid plexus:
16.3
RGS16
ENSSSCG00000015550
ENSG00000143333
Regulator of G protein signaling 16
Tissue enhanced
Detected in many
brain:
52.3
liver:
29.1
RGS6
ENSSSCG00000033093
ENSG00000182732
Regulator of G protein signaling 6
Tissue enhanced
Detected in many
brain:
18.1
heart:
15.1
male glands:
31.5
RHOU
ENSSSCG00000024418
ENSG00000116574
Ras homolog family member U
Tissue enhanced
Detected in many
brain:
48.7
male glands:
31.4
ROR2
ENSSSCG00000009593
ENSG00000169071
Receptor tyrosine kinase like orphan receptor 2
Tissue enhanced
Detected in many
cervix:
28.8
smooth muscle:
37.0
RSPO1
ENSSSCG00000032240
ENSG00000169218
R-spondin 1
Tissue enriched
Detected in some
lens:
98.7
S100A12
ENSSSCG00000032857
ENSG00000163221
Protein S100-A12
Tissue enriched
Detected in some
cornea:
228.2
S100A2
ENSSSCG00000006580
ENSG00000196754
S100 calcium binding protein A2
Tissue enhanced
Detected in many
mouth:
105.0
skin:
69.0
S100A8
ENSSSCG00000006590
ENSG00000143546
Protein S100-A8
Group enriched
Detected in some
cornea:
459.9
mouth:
180.6
S100A9
ENSSSCG00000006588
ENSG00000163220
RNA-binding region containing protein 2-like
Tissue enhanced
Detected in some
bone marrow:
31.5
cornea:
126.7
mouth:
117.6
SBK3
ENSSSCG00000037140
ENSG00000231274
SH3 domain binding kinase family member 3
Group enriched
Detected in some
adipose tissue:
21.1
heart:
22.0
lung:
13.0
mesothelial tissue:
47.0
retina:
21.7
SCEL
ENSSSCG00000009474
ENSG00000136155
Sciellin
Tissue enhanced
Detected in many
cornea:
18.9
mouth:
63.1
skin:
32.3
SCN2B
ENSSSCG00000021651
ENSG00000149575
Sodium voltage-gated channel beta subunit 2
Tissue enriched
Detected in some
brain:
47.5
SCN4B
ENSSSCG00000029199
ENSG00000177098
Sodium voltage-gated channel beta subunit 4
Tissue enhanced
Detected in many
brain:
61.8
skeletal muscle:
37.7
SEMA3C
ENSSSCG00000023784
ENSG00000075223
Semaphorin 3C
Tissue enhanced
Detected in many
cartilage:
97.2
SEMA3D
ENSSSCG00000015396
ENSG00000153993
Semaphorin 3D
Group enriched
Detected in many
cartilage:
103.9
thyroid gland:
27.0
SERPINB5
ENSSSCG00000004894
ENSG00000206075
Serpin family B member 5
Group enriched
Detected in many
cornea:
99.2
mouth:
57.1
skin:
46.7
SERPINE3
ENSSSCG00000009385
ENSG00000253309
Serpin family E member 3
Group enriched
Detected in some
adipose tissue:
46.5
gallbladder:
14.7
mesothelial tissue:
45.6
SFRP4
ENSSSCG00000035299
ENSG00000106483
Secreted frizzled-related protein 4 precursor
Tissue enhanced
Detected in many
dura mater:
134.2
upper respiratory system:
41.4
vagus nerve:
48.3
SFRP5
ENSSSCG00000010529
ENSG00000120057
Secreted frizzled-related protein 5 precursor
Tissue enhanced
Detected in many
adipose tissue:
50.7
choroid plexus:
112.8
vagus nerve:
88.5
SH3BP4
ENSSSCG00000034692
ENSG00000130147
SH3 domain binding protein 4
Low tissue specificity
Detected in all
SHOX2
ENSSSCG00000025238
ENSG00000168779
Short stature homeobox protein 2
Tissue enhanced
Detected in many
bone marrow:
18.6
synovial tissue:
45.8
SHROOM3
ENSSSCG00000008984
ENSG00000138771
Shroom family member 3
Tissue enhanced
Detected in many
ductus deferens:
63.6
salivary gland:
51.6
stomach:
71.7
SIM2
ENSSSCG00000027179
ENSG00000159263
Single-minded family bHLH transcription factor 2
Tissue enhanced
Detected in some
esophagus:
46.7
male glands:
42.5
stomach:
44.6
SIX1
ENSSSCG00000005087
ENSG00000126778
Homeobox protein SIX1
Tissue enhanced
Detected in many
pituitary gland:
39.5
salivary gland:
31.6
skeletal muscle:
47.3
SIX2
ENSSSCG00000008446
ENSG00000170577
SIX homeobox 2
Tissue enhanced
Detected in many
dura mater:
40.6
salivary gland:
30.5
upper respiratory system:
27.2
SKAP1
ENSSSCG00000017527
ENSG00000141293
Src kinase associated phosphoprotein 1
Tissue enhanced
Detected in many
large intestine:
19.5
lymphoid tissue:
41.3
SKAP2
ENSSSCG00000016708
ENSG00000005020
Src kinase associated phosphoprotein 2
Low tissue specificity
Detected in many
SLC1A4
ENSSSCG00000028282
ENSG00000115902
Solute carrier family 1 member 4
Tissue enhanced
Detected in many
lens:
49.8
skin:
26.5
SLC30A3
ENSSSCG00000021534
ENSG00000115194
Zinc transporter 3
Tissue enhanced
Detected in many
brain:
33.7
thyroid gland:
93.7
SLC36A2
ENSSSCG00000017086
ENSG00000186335
Solute carrier family 36 member 2
Group enriched
Detected in some
adipose tissue:
52.5
bone marrow:
25.4
skin:
14.0
vagus nerve:
33.5
SLC9A3R1
ENSSSCG00000017232
ENSG00000109062
Na(+)/H(+) exchange regulatory cofactor NHE-RF1
Tissue enhanced
Detected in many
kidney:
85.7
SLIT2
ENSSSCG00000008749
ENSG00000145147
Slit guidance ligand 2
Low tissue specificity
Detected in many
SOX6
ENSSSCG00000034191
ENSG00000110693
SRY-box 6
Tissue enhanced
Detected in many
cartilage:
71.4
SOX9
ENSSSCG00000017251
ENSG00000125398
SRY-box 9
Tissue enriched
Detected in many
cartilage:
161.2
SSC5D
ENSSSCG00000037450
ENSG00000179954
Scavenger receptor cysteine rich family member with 5 domains
Tissue enhanced
Detected in all
adipose tissue:
52.0
cartilage:
57.7
SSTR3
ENSSSCG00000027106
ENSG00000278195
Somatostatin receptor type 3
Tissue enhanced
Detected in many
brain:
12.8
choroid plexus:
49.4
ST14
ENSSSCG00000015246
ENSG00000149418
Suppression of tumorigenicity 14
Tissue enhanced
Detected in many
male glands:
36.3
stomach:
56.4
ST6GAL2
ENSSSCG00000008141
ENSG00000144057
ST6 beta-galactoside alpha-2,6-sialyltransferase 2
Tissue enhanced
Detected in many
adipose tissue:
23.5
brain:
16.0
large intestine:
27.4
retina:
15.6
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