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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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765 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MFSD4A
ENSSSCG00000021487
ENSG00000174514
Major facilitator superfamily domain containing 4A
Tissue enhanced
Detected in many
male glands:
45.0
salivary gland:
44.8
MGAM2
ENSSSCG00000016487
ENSG00000257743
Maltase-glucoamylase 2 (putative)
Group enriched
Detected in many
large intestine:
42.9
small intestine:
31.3
upper respiratory system:
32.8
MLPH
ENSSSCG00000032849
ENSG00000115648
Melanophilin
Tissue enhanced
Detected in many
esophagus:
60.9
male glands:
95.7
salivary gland:
81.4
stomach:
67.7
MMP13
ENSSSCG00000014988
ENSG00000137745
Matrix metallopeptidase 13
Group enriched
Detected in some
bone marrow:
49.1
dura mater:
123.1
MMP3
ENSSSCG00000014985
ENSG00000149968
Interstitial collagenase 18 kDa interstitial collagenase
Tissue enhanced
Detected in many
small intestine:
36.8
upper respiratory system:
34.7
urinary bladder:
43.0
MMS22L
ENSSSCG00000004344
ENSG00000146263
MMS22 like, DNA repair protein
Tissue enhanced
Detected in many
lymphoid tissue:
16.1
MND1
ENSSSCG00000009009
ENSG00000121211
Meiotic nuclear divisions 1
Tissue enhanced
Detected in many
lymphoid tissue:
17.8
MPZ
ENSSSCG00000006352
ENSG00000158887
Myelin protein zero
Tissue enriched
Detected in some
vagus nerve:
678.4
MS4A1
ENSSSCG00000021812
ENSG00000156738
B-lymphocyte antigen CD20
Tissue enhanced
Detected in some
lung:
28.1
lymphoid tissue:
79.8
small intestine:
31.3
upper respiratory system:
52.6
MT3
ENSSSCG00000024305
ENSG00000087250
Metallothionein-3
Tissue enhanced
Detected in many
brain:
123.6
pineal gland:
25.4
pituitary gland:
40.4
MUC6
ENSSSCG00000012835
ENSG00000184956
Mucin 6, oligomeric mucus/gel-forming
Tissue enriched
Detected in some
small intestine:
996.3
MXRA7
ENSSSCG00000037376
ENSG00000182534
Matrix remodeling associated 7
Low tissue specificity
Detected in all
MYBL1
ENSSSCG00000027872
ENSG00000185697
MYB proto-oncogene like 1
Tissue enhanced
Detected in many
lymphoid tissue:
44.4
penis:
18.7
MYBL2
ENSSSCG00000007366
ENSG00000101057
Myb-related protein B
Tissue enhanced
Detected in many
lymphoid tissue:
50.3
stomach:
31.0
upper respiratory system:
36.3
MYOC
ENSSSCG00000035066
ENSG00000034971
Myocilin precursor
Tissue enhanced
Detected in many
adipose tissue:
25.0
aorta:
25.1
cartilage:
31.5
penis:
25.0
MYOM1
ENSSSCG00000003693
ENSG00000101605
Myomesin 1
Group enriched
Detected in many
heart:
71.8
skeletal muscle:
130.9
MYRIP
ENSSSCG00000011269
ENSG00000170011
Rab effector MyRIP
Tissue enhanced
Detected in many
male glands:
35.2
na
ENSSSCG00000002709
ENSG00000135702,ENSG00000183196
Tissue enriched
Detected in many
cornea:
67.0
na
ENSSSCG00000002720
ENSG00000140839,ENSG00000157322,ENSG00000157335
Tissue enhanced
Detected in some
choroid plexus:
102.5
kidney:
65.9
na
ENSSSCG00000002849
ENSG00000171241
Tissue enhanced
Detected in many
lymphoid tissue:
22.4
testis:
14.9
upper respiratory system:
12.9
na
ENSSSCG00000002997
ENSG00000261857
Tissue enriched
Detected in some
cartilage:
161.2
na
ENSSSCG00000003011
Tissue enriched
Detected in some
large intestine:
181.3
na
ENSSSCG00000003047
Tissue enriched
Detected in some
large intestine:
291.6
na
ENSSSCG00000003753
PDZK1-interacting protein 1 precursor
Tissue enhanced
Detected in many
adrenal gland:
62.1
kidney:
46.4
ovary:
121.6
testis:
30.0
na
ENSSSCG00000004274
ENSG00000112280
Tissue enriched
Detected in some
cartilage:
165.0
na
ENSSSCG00000004703
ENSG00000223572,ENSG00000237289
Creatine kinase U-type, mitochondrial
Tissue enhanced
Detected in many
gallbladder:
53.4
large intestine:
124.0
retina:
55.7
na
ENSSSCG00000004806
ENSG00000198826
Tissue enhanced
Detected in many
lymphoid tissue:
18.0
na
ENSSSCG00000005278
Tissue enhanced
Detected in many
smooth muscle:
96.0
na
ENSSSCG00000006592
Tissue enriched
Detected in some
mouth:
258.3
na
ENSSSCG00000006719
ENSG00000203857,ENSG00000203859
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase 3-beta-hydroxy-Delta(5)-steroid dehydrogenase Steroid Delta-isomerase
Group enriched
Detected in some
adrenal gland:
375.8
ovary:
293.2
na
ENSSSCG00000007262
Long palate lung and nasal epithelium protein 5 precursor
Tissue enriched
Detected in some
upper respiratory system:
323.9
na
ENSSSCG00000007263
Tissue enriched
Detected in many
upper respiratory system:
59.7
na
ENSSSCG00000007493
ENSG00000087586
Aurora kinase A
Tissue enhanced
Detected in many
testis:
42.9
na
ENSSSCG00000007596
ENSG00000122543,ENSG00000135175
Tissue enhanced
Detected in many
lymphoid tissue:
15.3
upper respiratory system:
10.8
na
ENSSSCG00000007642
ENSG00000160862
Tissue enhanced
Detected in many
liver:
107.9
male glands:
63.8
salivary gland:
37.7
na
ENSSSCG00000008001
ENSG00000102854
Tissue enhanced
Detected in many
cornea:
31.8
gallbladder:
30.3
mesothelial tissue:
27.5
na
ENSSSCG00000008314
ENSG00000116039
Tissue enhanced
Detected in some
fallopian tube:
33.6
kidney:
103.8
na
ENSSSCG00000008769
Tissue enhanced
Detected in many
lung:
56.8
synovial tissue:
29.4
na
ENSSSCG00000009489
Tissue enriched
Detected in many
cartilage:
170.3
na
ENSSSCG00000009500
Claudin-10 precursor
Tissue enhanced
Detected in many
esophagus:
80.3
fallopian tube:
22.7
kidney:
25.1
upper respiratory system:
25.0
na
ENSSSCG00000009631
ENSG00000134020
Phosphatidylethanolamine-binding protein 4 precursor
Tissue enriched
Detected in many
epididymis:
225.1
na
ENSSSCG00000010064
Glutathione S-transferase theta-1
Tissue enhanced
Detected in many
epididymis:
65.1
male glands:
32.3
na
ENSSSCG00000010086
ENSG00000161180
Tissue enriched
Detected in many
testis:
47.6
na
ENSSSCG00000011436
ENSG00000173366,ENSG00000239732
Toll-like receptor 9
Tissue enhanced
Detected in many
lymphoid tissue:
16.8
na
ENSSSCG00000012003
Tissue enhanced
Detected in many
brain:
41.7
retina:
37.6
na
ENSSSCG00000012699
Four and a half LIM domains protein 1
Tissue enhanced
Detected in many
skeletal muscle:
443.8
na
ENSSSCG00000014672
ENSG00000258659
Tissue enhanced
Detected in many
lymphoid tissue:
64.7
upper respiratory system:
33.2
na
ENSSSCG00000016651
Low tissue specificity
Detected in all
na
ENSSSCG00000017062
ENSG00000145850
Tissue enhanced
Detected in many
lymphoid tissue:
53.3
synovial tissue:
28.0
upper respiratory system:
31.7
na
ENSSSCG00000017811
Tissue enhanced
Detected in many
male glands:
11.7
salivary gland:
20.0
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