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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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765 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KCNQ1
ENSSSCG00000039556
ENSG00000053918
Potassium voltage-gated channel subfamily Q member 1
Tissue enhanced
Detected in many
adrenal gland:
44.5
kidney:
34.7
male glands:
35.3
stomach:
54.3
KCNQ5
ENSSSCG00000004281
ENSG00000185760
Potassium voltage-gated channel subfamily Q member 5
Group enriched
Detected in many
brain:
24.8
cartilage:
65.1
KCTD16
ENSSSCG00000032826
ENSG00000183775
Potassium channel tetramerization domain containing 16
Tissue enhanced
Detected in many
brain:
24.2
choroid plexus:
19.7
male glands:
26.2
salivary gland:
16.0
KERA
ENSSSCG00000000917
ENSG00000139330
Keratocan
Tissue enriched
Detected in many
cornea:
288.6
KIAA1324
ENSSSCG00000006836
ENSG00000116299
KIAA1324
Tissue enhanced
Detected in many
male glands:
100.4
pituitary gland:
104.7
salivary gland:
32.1
KIF11
ENSSSCG00000010471
ENSG00000138160
Kinesin family member 11
Tissue enhanced
Detected in many
lymphoid tissue:
33.9
KIF18B
ENSSSCG00000017342
ENSG00000186185
Kinesin family member 18B
Tissue enhanced
Detected in many
lymphoid tissue:
26.5
stomach:
13.5
KIF20B
ENSSSCG00000010457
ENSG00000138182
Kinesin family member 20B
Tissue enhanced
Detected in all
lymphoid tissue:
20.8
testis:
25.1
KIF22
ENSSSCG00000029509
ENSG00000079616
Kinesin-like protein KIF22
Tissue enhanced
Detected in all
lymphoid tissue:
26.9
KIF26B
ENSSSCG00000010879
ENSG00000162849
Kinesin family member 26B
Tissue enhanced
Detected in many
heart:
31.5
kidney:
19.4
KLHL6
ENSSSCG00000031476
ENSG00000172578
Kelch like family member 6
Tissue enhanced
Detected in many
lymphoid tissue:
53.6
KRT13
ENSSSCG00000017445
ENSG00000171401
Keratin 13
Tissue enriched
Detected in some
mouth:
692.3
KRT4
ENSSSCG00000024610
ENSG00000170477
Keratin 4
Group enriched
Detected in some
esophagus:
91.9
mouth:
354.0
LAMP3
ENSSSCG00000026097
ENSG00000078081
Lysosomal associated membrane protein 3
Group enriched
Detected in many
lung:
97.7
lymphoid tissue:
55.1
LARGE2
ENSSSCG00000013266
ENSG00000165905
LARGE xylosyl- and glucuronyltransferase 2
Tissue enhanced
Detected in many
male glands:
53.5
salivary gland:
35.3
LCN1
ENSSSCG00000035964
ENSG00000160349
Lipocalin-1 precursor
Group enriched
Detected in some
esophagus:
521.6
upper respiratory system:
1195.4
LCP1
ENSSSCG00000009412
ENSG00000136167
Lymphocyte cytosolic protein 1
Tissue enhanced
Detected in many
lymphoid tissue:
107.8
upper respiratory system:
55.1
LGALS13
ENSSSCG00000002983
ENSG00000105198,ENSG00000105205,ENSG00000249861
Galactoside-binding soluble lectin 13
Tissue enriched
Detected in some
upper respiratory system:
70.8
LGR5
ENSSSCG00000030511
ENSG00000139292
Leucine-rich repeat-containing G-protein coupled receptor 5 precursor
Tissue enhanced
Detected in many
skin:
34.4
LIF
ENSSSCG00000040961
ENSG00000128342
Leukemia inhibitory factor precursor
Tissue enhanced
Detected in many
ovary:
35.1
stomach:
20.9
LIMD2
ENSSSCG00000040509
ENSG00000136490
LIM domain-containing protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
51.5
LIPG
ENSSSCG00000004509
ENSG00000101670
Endothelial lipase precursor
Tissue enhanced
Detected in all
adrenal gland:
49.3
ovary:
56.0
LMAN1L
ENSSSCG00000001899
ENSG00000140506
Lectin, mannose binding 1 like
Group enriched
Detected in some
esophagus:
79.5
male glands:
267.8
salivary gland:
90.9
LMNB1
ENSSSCG00000014248
ENSG00000113368
Lamin B1
Tissue enhanced
Detected in all
lymphoid tissue:
52.3
LNX1
ENSSSCG00000008838
ENSG00000072201
Ligand of numb-protein X 1
Tissue enhanced
Detected in many
brain:
26.7
male glands:
27.7
LOXL1
ENSSSCG00000001914
ENSG00000129038
Lysyl oxidase like 1
Tissue enhanced
Detected in all
choroid plexus:
55.0
LPL
ENSSSCG00000040631
ENSG00000175445
Lipoprotein lipase precursor
Tissue enhanced
Detected in many
adipose tissue:
134.0
aorta:
89.4
bone marrow:
101.4
LPO
ENSSSCG00000017636
ENSG00000167419
Lactoperoxidase
Group enriched
Detected in many
esophagus:
97.1
salivary gland:
80.3
LPXN
ENSSSCG00000021176
ENSG00000110031
Leupaxin
Tissue enhanced
Detected in many
lymphoid tissue:
46.3
upper respiratory system:
28.9
LRMP
ENSSSCG00000000563
ENSG00000118308
Lymphoid restricted membrane protein
Tissue enhanced
Detected in many
lymphoid tissue:
77.5
upper respiratory system:
34.9
LRRC26
ENSSSCG00000032509
ENSG00000184709
Leucine rich repeat containing 26
Tissue enriched
Detected in many
male glands:
160.2
LRRN1
ENSSSCG00000023806
ENSG00000175928
Leucine rich repeat neuronal 1
Group enriched
Detected in many
brain:
37.9
pineal gland:
27.7
LTA
ENSSSCG00000001403
ENSG00000226979
Lymphotoxin-alpha
Tissue enhanced
Detected in many
lymphoid tissue:
29.5
upper respiratory system:
8.7
LTF
ENSSSCG00000029879
ENSG00000012223
Lactotransferrin precursor
Group enriched
Detected in many
epididymis:
127.0
upper respiratory system:
186.6
LY86
ENSSSCG00000032355
ENSG00000112799
Lymphocyte antigen 86 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
46.7
LY9
ENSSSCG00000006375
ENSG00000122224
Lymphocyte antigen 9
Tissue enriched
Detected in many
lymphoid tissue:
54.7
LYL1
ENSSSCG00000024549
ENSG00000104903
LYL1, basic helix-loop-helix family member
Tissue enhanced
Detected in many
lymphoid tissue:
59.9
LYPD3
ENSSSCG00000003062
ENSG00000124466
LY6/PLAUR domain containing 3
Group enriched
Detected in some
cornea:
51.4
mouth:
55.6
skin:
24.5
MAMDC2
ENSSSCG00000030655
ENSG00000165072
MAM domain-containing protein 2
Tissue enhanced
Detected in many
smooth muscle:
34.5
MAP4K1
ENSSSCG00000002962
ENSG00000104814
Mitogen-activated protein kinase kinase kinase kinase 1
Tissue enhanced
Detected in many
lymphoid tissue:
44.9
stomach:
23.4
upper respiratory system:
25.3
MAPK4
ENSSSCG00000004520
ENSG00000141639
Mitogen-activated protein kinase 4
Tissue enhanced
Detected in many
brain:
31.5
choroid plexus:
72.0
MARCH1
ENSSSCG00000039175
ENSG00000145416
Membrane associated ring-CH-type finger 1
Tissue enhanced
Detected in many
lymphoid tissue:
20.1
retina:
20.3
MATN1
ENSSSCG00000022554
ENSG00000162510
Matrilin 1, cartilage matrix protein
Tissue enriched
Detected in some
upper respiratory system:
59.0
MATN3
ENSSSCG00000008603
ENSG00000132031
Matrilin 3
Tissue enriched
Detected in some
cartilage:
79.3
MCM2
ENSSSCG00000011624
ENSG00000073111
Minichromosome maintenance complex component 2
Tissue enhanced
Detected in many
lymphoid tissue:
18.5
upper respiratory system:
17.7
MCM3
ENSSSCG00000025488
ENSG00000112118
Minichromosome maintenance complex component 3
Tissue enhanced
Detected in all
lymphoid tissue:
30.7
MCM4
ENSSSCG00000006273
ENSG00000104738
Minichromosome maintenance complex component 4
Low tissue specificity
Detected in all
MCM5
ENSSSCG00000022823
ENSG00000100297
Minichromosome maintenance complex component 5
Tissue enhanced
Detected in many
lymphoid tissue:
32.5
upper respiratory system:
31.1
MCM6
ENSSSCG00000035564
ENSG00000076003
Minichromosome maintenance complex component 6
Tissue enhanced
Detected in all
lymphoid tissue:
38.8
MEDAG
ENSSSCG00000009331
ENSG00000102802
Mesenteric estrogen dependent adipogenesis
Tissue enhanced
Detected in many
mesothelial tissue:
56.1
ovary:
35.8
synovial tissue:
51.9
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