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Chromosome
1
2
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ADAMTSL1
ENSSSCG00000040366
ENSG00000178031
ADAMTS like 1
Tissue enhanced
Detected in all
synovial tissue:
31.6
AHRR
ENSSSCG00000032843
ENSG00000063438
Aryl-hydrocarbon receptor repressor
Tissue enhanced
Detected in some
mouth:
16.8
skin:
23.9
stomach:
11.8
urinary bladder:
14.5
ALDH3B2
ENSSSCG00000026349
ENSG00000132746
Aldehyde dehydrogenase 3 family member B2
Tissue enhanced
Detected in many
mouth:
13.0
skin:
48.0
ALKAL2
ENSSSCG00000039057
ENSG00000189292
ALK and LTK ligand 2
Tissue enhanced
Detected in all
skin:
24.1
ALOX12B
ENSSSCG00000017980
ENSG00000179477
Arachidonate 12-lipoxygenase, 12R type
Tissue enriched
Detected in some
skin:
70.4
ASTN2
ENSSSCG00000005502
ENSG00000148219
Astrotactin 2
Group enriched
Detected in many
brain:
31.8
cornea:
21.1
ATP10B
ENSSSCG00000021527
ENSG00000118322
ATPase phospholipid transporting 10B (putative)
Tissue enhanced
Detected in many
large intestine:
50.3
small intestine:
25.6
stomach:
21.1
C6orf15
ENSSSCG00000001388
ENSG00000204542
Uncharacterized protein C6orf15 homolog precursor
Tissue enriched
Detected in some
mouth:
122.7
CD2
ENSSSCG00000006736
ENSG00000116824
T-cell surface antigen CD2 precursor
Tissue enhanced
Detected in many
large intestine:
23.1
lymphoid tissue:
82.5
small intestine:
26.9
stomach:
27.7
CDSN
ENSSSCG00000030903
ENSG00000204539
Corneodesmosin
Tissue enriched
Detected in some
skin:
49.1
COL28A1
ENSSSCG00000015342
ENSG00000215018
Collagen type XXVIII alpha 1 chain
Tissue enriched
Detected in many
vagus nerve:
84.0
CST6
ENSSSCG00000012960
ENSG00000175315
Cystatin E/M
Tissue enhanced
Detected in many
epididymis:
96.1
male glands:
81.3
skin:
99.4
DES
ENSSSCG00000020785
ENSG00000175084
Desmin
Tissue enhanced
Detected in many
skeletal muscle:
301.6
smooth muscle:
547.0
urinary bladder:
220.0
DIO3
ENSSSCG00000036990
ENSG00000197406
Iodothyronine deiodinase 3
Tissue enhanced
Detected in many
brain:
11.6
skin:
12.5
EFNA5
ENSSSCG00000036520
ENSG00000184349
Ephrin A5
Low tissue specificity
Detected in many
FAM84A
ENSSSCG00000008664
ENSG00000162981
Family with sequence similarity 84 member A
Tissue enhanced
Detected in many
endometrium:
83.8
epididymis:
49.4
thyroid gland:
73.1
FBN3
ENSSSCG00000013594
ENSG00000142449
Fibrillin 3
Tissue enriched
Detected in some
skin:
16.9
FCN2
ENSSSCG00000023333
Ficolin-2 precursor
Tissue enhanced
Detected in many
adipose tissue:
64.7
large intestine:
57.6
small intestine:
75.4
stomach:
99.9
vagus nerve:
43.5
FLG2
ENSSSCG00000030031
ENSG00000143520
Filaggrin family member 2
Tissue enriched
Detected in some
skin:
69.9
FOXD3
ENSSSCG00000032215
ENSG00000187140
Forkhead box D3
Tissue enhanced
Detected in many
brain:
10.9
vagus nerve:
36.0
FZD3
ENSSSCG00000009679
ENSG00000104290
Frizzled class receptor 3
Tissue enhanced
Detected in many
brain:
25.7
FZD7
ENSSSCG00000016111
ENSG00000155760
Frizzled class receptor 7
Tissue enhanced
Detected in all
choroid plexus:
52.3
GCSAM
ENSSSCG00000021511
ENSG00000174500
Germinal center-associated signaling and motility protein
Tissue enhanced
Detected in many
lymphoid tissue:
40.5
upper respiratory system:
29.3
GDPD2
ENSSSCG00000012376
ENSG00000130055
Glycerophosphodiester phosphodiesterase domain containing 2
Tissue enhanced
Detected in many
choroid plexus:
25.2
skin:
29.3
GJB6
ENSSSCG00000036474
ENSG00000121742
Gap junction protein beta 6
Tissue enhanced
Detected in many
brain:
24.3
mouth:
21.2
skin:
39.1
GRB14
ENSSSCG00000015901
ENSG00000115290
Growth factor receptor bound protein 14
Tissue enhanced
Detected in many
adrenal gland:
78.9
liver:
34.4
testis:
29.8
GUCA1B
ENSSSCG00000001637
ENSG00000112599
Guanylate cyclase activator 1B
Tissue enriched
Detected in some
retina:
65.9
HAND2
ENSSSCG00000031537
ENSG00000164107
Heart and neural crest derivatives expressed 2
Tissue enhanced
Detected in many
adrenal gland:
35.3
gallbladder:
38.2
heart:
75.3
HTR1D
ENSSSCG00000025500
ENSG00000179546
5-hydroxytryptamine receptor 1D
Tissue enhanced
Detected in many
ovary:
25.9
testis:
20.4
IFNE
ENSSSCG00000005136
ENSG00000184995
Interferon epsilon
Tissue enhanced
Detected in many
skin:
31.1
thyroid gland:
27.4
IKZF2
ENSSSCG00000016164
ENSG00000030419
IKAROS family zinc finger 2
Tissue enhanced
Detected in many
lymphoid tissue:
50.2
KPRP
ENSSSCG00000006598
ENSG00000203786
Keratinocyte proline rich protein
Group enriched
Detected in some
mouth:
21.9
skin:
66.0
KRT10
ENSSSCG00000028522
ENSG00000186395
Keratin 10
Group enriched
Detected in many
mouth:
93.8
skin:
212.0
KRT28
ENSSSCG00000017461
ENSG00000173908
Keratin 28
Tissue enriched
Detected in some
skin:
37.0
KRT74
ENSSSCG00000028334
ENSG00000170484
Keratin 74
Tissue enriched
Detected in some
skin:
37.9
KRT77
ENSSSCG00000024092
ENSG00000189182
Keratin 77
Tissue enriched
Detected in single
skin:
187.5
KRTDAP
ENSSSCG00000002882
ENSG00000188508
Keratinocyte differentiation associated protein
Group enriched
Detected in some
mouth:
24.6
skin:
52.3
LMO3
ENSSSCG00000036499
ENSG00000048540
LIM domain only protein 3
Tissue enhanced
Detected in some
brain:
43.3
pituitary gland:
10.5
thyroid gland:
12.4
MAT1A
ENSSSCG00000010337
ENSG00000151224
S-adenosylmethionine synthase
Tissue enriched
Detected in some
liver:
229.1
MFAP3L
ENSSSCG00000009709
ENSG00000198948
Microfibril associated protein 3 like
Tissue enhanced
Detected in many
brain:
24.9
kidney:
38.9
skin:
23.6
MGST1
ENSSSCG00000032580
ENSG00000008394
Microsomal glutathione S-transferase 1
Tissue enhanced
Detected in all
liver:
129.2
thyroid gland:
154.6
MKX
ENSSSCG00000029783
ENSG00000150051
Mohawk homeobox
Tissue enhanced
Detected in many
cartilage:
33.3
penis:
37.4
MOXD1
ENSSSCG00000004191
ENSG00000079931
Monooxygenase DBH like 1
Tissue enhanced
Detected in many
cornea:
73.8
liver:
18.1
skin:
19.6
MYO1G
ENSSSCG00000016742
ENSG00000136286
Myosin IG
Tissue enhanced
Detected in many
lung:
16.4
lymphoid tissue:
39.0
stomach:
20.4
na
ENSSSCG00000000245
ENSG00000170465,ENSG00000205420
Group enriched
Detected in some
mouth:
222.9
skin:
58.5
na
ENSSSCG00000000251
Tissue enriched
Detected in some
skin:
243.3
na
ENSSSCG00000004081
Tissue enhanced
Detected in many
brain:
60.3
na
ENSSSCG00000004674
Tissue enriched
Detected in many
brain:
57.1
na
ENSSSCG00000004850
ENSG00000104059
Tissue enriched
Detected in some
brain:
26.0
na
ENSSSCG00000015632
ENSG00000106078
Tissue enhanced
Detected in many
heart:
43.9
kidney:
37.5
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