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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000017433
Group enriched
Detected in some
cornea:
5.7
mouth:
8.0
skin:
16.7
na
ENSSSCG00000023192
Tissue enhanced
Detected in many
choroid plexus:
49.6
kidney:
32.6
retina:
18.8
na
ENSSSCG00000025086
ENSG00000062096
Tissue enhanced
Detected in some
lymphoid tissue:
9.6
skin:
35.5
upper respiratory system:
26.7
na
ENSSSCG00000031090
Group enriched
Detected in some
bone marrow:
153.2
dura mater:
112.2
na
ENSSSCG00000031380
Tissue enhanced
Detected in many
brain:
129.6
ovary:
46.9
na
ENSSSCG00000031529
Interferon omega 1 precursor
Tissue enhanced
Detected in many
skin:
23.5
na
ENSSSCG00000031747
Group enriched
Detected in many
kidney:
15.0
skin:
18.2
na
ENSSSCG00000031813
ENSG00000206579
Tissue enriched
Detected in many
brain:
17.4
na
ENSSSCG00000032870
Low tissue specificity
Detected in many
na
ENSSSCG00000032952
Tissue enhanced
Detected in some
brain:
38.5
gallbladder:
10.6
retina:
24.0
na
ENSSSCG00000033749
Tissue enhanced
Detected in many
cervix:
13.6
penis:
13.9
skeletal muscle:
14.1
na
ENSSSCG00000034400
ENSG00000129455
Group enriched
Detected in some
brain:
3.5
skin:
13.5
na
ENSSSCG00000038121
ENSG00000159450
Group enriched
Detected in some
mouth:
37.6
skin:
117.4
na
ENSSSCG00000040619
Low tissue specificity
Detected in many
NRXN1
ENSSSCG00000008419
ENSG00000179915
Neurexin 1
Tissue enhanced
Detected in many
bone marrow:
25.5
brain:
62.7
pituitary gland:
24.4
PDZRN4
ENSSSCG00000000791
ENSG00000165966
PDZ domain containing ring finger 4
Tissue enhanced
Detected in many
choroid plexus:
19.5
skin:
31.0
smooth muscle:
23.3
PFKFB2
ENSSSCG00000015660
ENSG00000123836
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
Tissue enhanced
Detected in many
mouth:
32.0
skin:
57.4
PLA2G4D
ENSSSCG00000004733
ENSG00000159337
Phospholipase A2 group IVD
Group enriched
Detected in some
mouth:
7.1
skin:
16.7
testis:
8.0
PLA2G4E
ENSSSCG00000037292
ENSG00000188089
Phospholipase A2 group IVE
Tissue enhanced
Detected in some
brain:
9.5
skin:
38.0
PLIN1
ENSSSCG00000001844
ENSG00000166819
Perilipin-1
Group enriched
Detected in many
adipose tissue:
207.5
aorta:
81.3
bone marrow:
108.1
POU2F3
ENSSSCG00000028237
ENSG00000137709
POU class 2 homeobox 3
Group enriched
Detected in some
breast:
35.7
skin:
88.7
PPP1R1A
ENSSSCG00000000298
ENSG00000135447
Protein phosphatase 1 regulatory inhibitor subunit 1A
Tissue enriched
Detected in many
skeletal muscle:
231.9
PTN
ENSSSCG00000016522
ENSG00000105894
Pleiotrophin
Tissue enhanced
Detected in many
brain:
68.8
dura mater:
88.3
gallbladder:
116.6
PTPRD
ENSSSCG00000005194
ENSG00000153707
Protein tyrosine phosphatase, receptor type D
Tissue enhanced
Detected in many
brain:
50.8
cartilage:
34.8
kidney:
38.0
RASGEF1C
ENSSSCG00000014011
ENSG00000146090
RasGEF domain family member 1C
Group enriched
Detected in many
brain:
28.4
ductus deferens:
8.1
vagus nerve:
28.2
RBM24
ENSSSCG00000038455
ENSG00000112183
RNA binding motif protein 24
Tissue enhanced
Detected in many
heart:
48.1
lens:
39.2
skeletal muscle:
94.7
RCVRN
ENSSSCG00000037991
ENSG00000109047
Recoverin
Group enriched
Detected in some
pineal gland:
139.1
retina:
128.1
REEP6
ENSSSCG00000026387
ENSG00000115255
Receptor accessory protein 6
Tissue enhanced
Detected in many
retina:
114.8
testis:
56.8
ROR2
ENSSSCG00000009593
ENSG00000169071
Receptor tyrosine kinase like orphan receptor 2
Tissue enhanced
Detected in many
cervix:
28.8
smooth muscle:
37.0
RORA
ENSSSCG00000004576
ENSG00000069667
RAR related orphan receptor A
Tissue enhanced
Detected in all
skin:
66.7
RTN1
ENSSSCG00000025013
ENSG00000139970
Reticulon-1 isoform 2
Tissue enhanced
Detected in some
brain:
52.6
pineal gland:
20.2
retina:
11.8
SCN7A
ENSSSCG00000015914
ENSG00000136546
Sodium voltage-gated channel alpha subunit 7
Group enriched
Detected in many
ductus deferens:
24.9
vagus nerve:
56.7
SFRP1
ENSSSCG00000025822
ENSG00000104332
Secreted frizzled related protein 1
Tissue enhanced
Detected in many
choroid plexus:
166.0
SLC1A7
ENSSSCG00000003852
ENSG00000162383
Solute carrier family 1 member 7
Group enriched
Detected in many
pineal gland:
11.7
retina:
32.2
SLC30A1
ENSSSCG00000039472
ENSG00000170385
Zinc transporter 1
Tissue enhanced
Detected in all
choroid plexus:
35.7
SLC36A2
ENSSSCG00000017086
ENSG00000186335
Solute carrier family 36 member 2
Group enriched
Detected in some
adipose tissue:
52.5
bone marrow:
25.4
skin:
14.0
vagus nerve:
33.5
SLC39A10
ENSSSCG00000031954
ENSG00000196950
Solute carrier family 39 member 10
Tissue enhanced
Detected in all
brain:
37.7
SLC39A8
ENSSSCG00000009169
ENSG00000138821
Solute carrier family 39 member 8
Tissue enhanced
Detected in many
male glands:
64.5
mesothelial tissue:
55.2
upper respiratory system:
35.1
SLC44A3
ENSSSCG00000006888
ENSG00000143036
Solute carrier family 44 member 3
Tissue enhanced
Detected in many
male glands:
32.7
SLC4A11
ENSSSCG00000007157
ENSG00000088836
Solute carrier family 4 member 11
Tissue enhanced
Detected in many
cornea:
94.2
kidney:
44.4
SLC8A3
ENSSSCG00000002315
ENSG00000100678
Solute carrier family 8 member A3
Tissue enhanced
Detected in many
brain:
19.5
cartilage:
43.4
skeletal muscle:
17.7
SMOC1
ENSSSCG00000002314
ENSG00000198732
SPARC related modular calcium binding 1
Tissue enhanced
Detected in many
brain:
35.5
cartilage:
36.3
lymphoid tissue:
50.0
SOX9
ENSSSCG00000017251
ENSG00000125398
SRY-box 9
Tissue enriched
Detected in many
cartilage:
161.2
SPRP
ENSSSCG00000022269
ENSG00000163209
Cornifin
Tissue enriched
Detected in some
mouth:
283.8
SPTB
ENSSSCG00000002277
ENSG00000070182
Spectrin beta, erythrocytic
Tissue enhanced
Detected in many
heart:
28.4
pineal gland:
64.4
skeletal muscle:
43.1
SRCIN1
ENSSSCG00000018056
ENSG00000277363
SRC kinase signaling inhibitor 1
Group enriched
Detected in many
brain:
42.1
skin:
49.3
TMEM219
ENSSSCG00000021010
ENSG00000149932
Transmembrane protein 219
Tissue enhanced
Detected in many
male glands:
48.2
TUSC3
ENSSSCG00000021988
ENSG00000104723
Tumor suppressor candidate 3
Tissue enhanced
Detected in many
epididymis:
41.1
pineal gland:
61.3
pituitary gland:
43.7
UBXN11
ENSSSCG00000033546
ENSG00000158062
UBX domain protein 11
Tissue enhanced
Detected in many
lymphoid tissue:
38.5
WNK4
ENSSSCG00000017387
ENSG00000126562
WNK lysine deficient protein kinase 4
Tissue enhanced
Detected in many
cartilage:
36.2
kidney:
46.7
penis:
29.3
vagus nerve:
36.8
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