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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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240 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AADACL2
ENSSSCG00000033781
ENSG00000197953
Arylacetamide deacetylase like 2
Group enriched
Detected in some
cartilage:
3.8
mouth:
11.8
skin:
8.1
testis:
4.2
upper respiratory system:
3.3
ADA
ENSSSCG00000021255
ENSG00000196839
Adenosine deaminase
Tissue enhanced
Detected in many
mouth:
124.3
small intestine:
43.7
stomach:
31.6
ADAMTS19
ENSSSCG00000014259
ENSG00000145808
ADAM metallopeptidase with thrombospondin type 1 motif 19
Tissue enhanced
Detected in many
adrenal gland:
31.3
cervix:
46.0
lens:
28.4
ADCYAP1R1
ENSSSCG00000016672
ENSG00000078549
Pituitary adenylate cyclase-activating polypeptide type I receptor precursor
Group enriched
Detected in many
brain:
32.6
choroid plexus:
19.4
heart:
36.6
male glands:
36.8
ADIPOQ
ENSSSCG00000039103
ENSG00000181092
Adiponectin precursor
Group enriched
Detected in many
adipose tissue:
213.0
aorta:
64.3
bone marrow:
147.9
ADRA2A
ENSSSCG00000010629
ENSG00000150594
Alpha-2A adrenergic receptor
Tissue enhanced
Detected in many
gallbladder:
51.0
stomach:
34.8
ALDH1A1
ENSSSCG00000028996
ENSG00000165092
Aldehyde dehydrogenase 1 family member A1
Tissue enhanced
Detected in many
lens:
147.3
liver:
94.7
ALOX12B
ENSSSCG00000017980
ENSG00000179477
Arachidonate 12-lipoxygenase, 12R type
Tissue enriched
Detected in some
skin:
70.4
ALX3
ENSSSCG00000006812
ENSG00000156150
ALX homeobox 3
Tissue enhanced
Detected in many
mesothelial tissue:
16.1
penis:
41.2
ANPEP
ENSSSCG00000001849
ENSG00000166825
Aminopeptidase N
Tissue enhanced
Detected in many
male glands:
57.2
small intestine:
208.3
ANXA1
ENSSSCG00000005267
ENSG00000135046
Annexin A1
Tissue enhanced
Detected in all
mouth:
174.6
APOE
ENSSSCG00000003088
ENSG00000130203
Apolipoprotein E precursor
Tissue enriched
Detected in many
liver:
755.1
AQP3
ENSSSCG00000040513
ENSG00000165272
Aquaporin-3
Tissue enhanced
Detected in many
kidney:
52.7
mouth:
41.9
upper respiratory system:
73.3
ARL14EPL
ENSSSCG00000014222
ENSG00000268223
ADP ribosylation factor like GTPase 14 effector protein like
Tissue enhanced
Detected in many
adipose tissue:
10.6
mouth:
10.9
vagus nerve:
20.3
ASB9
ENSSSCG00000012132
ENSG00000102048
Ankyrin repeat and SOCS box protein 9
Tissue enhanced
Detected in many
cornea:
21.6
mouth:
21.9
ASTN1
ENSSSCG00000015513
ENSG00000152092
Astrotactin 1
Tissue enhanced
Detected in many
brain:
33.8
pineal gland:
12.0
pituitary gland:
15.2
BARX1
ENSSSCG00000008081
ENSG00000131668
BARX homeobox 1
Tissue enriched
Detected in some
cartilage:
70.4
BLNK
ENSSSCG00000010504
ENSG00000095585
B cell linker
Tissue enhanced
Detected in many
lymphoid tissue:
38.4
small intestine:
27.2
BSP1
ENSSSCG00000003053
Seminal plasma protein pB1 precursor
Tissue enriched
Detected in some
male glands:
499.5
C1orf56
ENSSSCG00000006639
ENSG00000143443
Chromosome 1 open reading frame 56
Tissue enriched
Detected in some
testis:
180.1
C1orf68
ENSSSCG00000006599
ENSG00000198854
Chromosome 1 open reading frame 68
Tissue enriched
Detected in some
skin:
78.1
C1QTNF12
ENSSSCG00000003333
ENSG00000184163
C1q and TNF related 12
Tissue enhanced
Detected in many
skin:
22.9
C1QTNF4
ENSSSCG00000013231
ENSG00000172247
C1q and TNF related 4
Group enriched
Detected in many
brain:
45.2
retina:
11.9
C6orf132
ENSSSCG00000036801
ENSG00000188112
Chromosome 6 open reading frame 132
Tissue enhanced
Detected in many
cornea:
85.0
mouth:
39.1
stomach:
38.1
C6orf15
ENSSSCG00000001388
ENSG00000204542
Uncharacterized protein C6orf15 homolog precursor
Tissue enriched
Detected in some
mouth:
122.7
C8orf74
ENSSSCG00000009691
ENSG00000171060
Chromosome 8 open reading frame 74
Tissue enriched
Detected in some
testis:
30.1
CA2
ENSSSCG00000006140
ENSG00000104267
Carbonic anhydrase 2
Tissue enhanced
Detected in many
choroid plexus:
70.9
stomach:
149.1
CA3
ENSSSCG00000006141
ENSG00000164879
Carbonic anhydrase 3
Tissue enriched
Detected in many
skeletal muscle:
324.2
CACNA2D2
ENSSSCG00000011412
ENSG00000007402
Calcium voltage-gated channel auxiliary subunit alpha2delta 2
Tissue enhanced
Detected in many
brain:
20.8
urinary bladder:
23.7
CASP14
ENSSSCG00000013835
ENSG00000105141
Caspase 14
Group enriched
Detected in some
ovary:
18.0
skin:
34.9
CBR2
ENSSSCG00000031851
Carbonyl reductase
Group enriched
Detected in many
liver:
177.7
lung:
292.2
upper respiratory system:
105.0
CDKN2B
ENSSSCG00000034120
ENSG00000147883
Cyclin-dependent kinase 4 inhibitor B
Tissue enhanced
Detected in all
mouth:
21.6
small intestine:
20.9
CGREF1
ENSSSCG00000008555
ENSG00000138028
Cell growth regulator with EF-hand domain 1
Tissue enhanced
Detected in many
esophagus:
36.8
male glands:
137.1
salivary gland:
40.7
CHMP4A
ENSSSCG00000033432
ENSG00000254505
Charged multivesicular body protein 4A
Low tissue specificity
Detected in many
CHRNE
ENSSSCG00000017909
ENSG00000108556
Cholinergic receptor nicotinic epsilon subunit
Tissue enhanced
Detected in many
brain:
9.4
mouth:
11.3
salivary gland:
11.4
skeletal muscle:
17.4
CILP
ENSSSCG00000004928
ENSG00000138615
Cartilage intermediate layer protein
Tissue enriched
Detected in some
cartilage:
332.4
CLIC3
ENSSSCG00000037395
ENSG00000169583
Chloride intracellular channel 3
Tissue enhanced
Detected in many
cornea:
37.8
thyroid gland:
75.4
CNFN
ENSSSCG00000027022
ENSG00000105427
Cornifelin
Tissue enriched
Detected in some
mouth:
206.7
COL11A1
ENSSSCG00000006857
ENSG00000060718
Collagen type XI alpha 1 chain
Tissue enriched
Detected in many
cartilage:
170.9
COMP
ENSSSCG00000013916
ENSG00000105664
Cartilage oligomeric matrix protein
Tissue enriched
Detected in some
cartilage:
691.8
CPNE5
ENSSSCG00000001567
ENSG00000124772
Copine 5
Tissue enriched
Detected in some
brain:
65.8
CRABP2
ENSSSCG00000006472
ENSG00000143320
Cellular retinoic acid-binding protein 2
Tissue enhanced
Detected in many
brain:
53.9
cartilage:
35.4
mouth:
67.3
CSTB
ENSSSCG00000027357
ENSG00000160213
Cystatin-B
Tissue enhanced
Detected in all
mouth:
162.4
CTH
ENSSSCG00000003789
ENSG00000116761
Cystathionine gamma-lyase
Group enriched
Detected in many
kidney:
30.9
liver:
88.3
CYP4F22
ENSSSCG00000023607
ENSG00000171954
Cytochrome P450 family 4 subfamily F member 22
Group enriched
Detected in some
mouth:
19.6
skin:
21.9
DAPL1
ENSSSCG00000015879
ENSG00000163331
Death-associated protein-like 1
Group enriched
Detected in some
cornea:
129.1
lens:
209.3
DEFB1
ENSSSCG00000027555
Beta-defensin 1
Tissue enriched
Detected in some
lens:
244.7
DGAT2L6
ENSSSCG00000012381
ENSG00000184210
Diacylglycerol O-acyltransferase 2 like 6
Group enriched
Detected in some
mouth:
20.3
skin:
25.6
DKK2
ENSSSCG00000032094
ENSG00000155011
Dickkopf WNT signaling pathway inhibitor 2
Tissue enhanced
Detected in many
cornea:
29.4
ovary:
44.1
DUOXA1
ENSSSCG00000004677
ENSG00000140254
Dual oxidase maturation factor 1
Tissue enhanced
Detected in many
mouth:
24.3
stomach:
29.6
thyroid gland:
46.7
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