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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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16
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MYLK
ENSSSCG00000011867
ENSG00000065534
Myosin light chain kinase
Tissue enhanced
Detected in many
ductus deferens:
164.5
endometrium:
133.8
smooth muscle:
313.8
MYLPF
ENSSSCG00000007799
ENSG00000180209
Myosin regulatory light chain 2, skeletal muscle isoform
Tissue enriched
Detected in some
skeletal muscle:
876.7
MYO10
ENSSSCG00000016794
ENSG00000145555
Myosin X
Low tissue specificity
Detected in all
MYO16
ENSSSCG00000009543
ENSG00000041515
Myosin XVI
Tissue enhanced
Detected in some
brain:
36.7
lens:
16.1
liver:
11.6
pineal gland:
12.5
retina:
11.4
MYO1C
ENSSSCG00000021821
ENSG00000197879
Myosin IC
Low tissue specificity
Detected in many
MYO1D
ENSSSCG00000017728
ENSG00000176658
Myosin ID
Tissue enhanced
Detected in many
cartilage:
55.8
MYO1E
ENSSSCG00000004587
ENSG00000157483
Myosin IE
Low tissue specificity
Detected in all
MYO3A
ENSSSCG00000011059
ENSG00000095777
Myosin IIIA
Tissue enhanced
Detected in some
lymphoid tissue:
12.9
salivary gland:
20.6
MYO5B
ENSSSCG00000004511
ENSG00000167306
Myosin VB
Tissue enhanced
Detected in many
lens:
59.4
MYO6
ENSSSCG00000004478
ENSG00000196586
Unconventional myosin-VI
Low tissue specificity
Detected in all
MYOCD
ENSSSCG00000031988
ENSG00000141052
Myocardin
Tissue enhanced
Detected in many
cervix:
26.2
endometrium:
28.2
heart:
30.6
MYOM1
ENSSSCG00000003693
ENSG00000101605
Myomesin 1
Group enriched
Detected in many
heart:
71.8
skeletal muscle:
130.9
MYOT
ENSSSCG00000014324
ENSG00000120729
Myotilin
Tissue enriched
Detected in some
skeletal muscle:
267.8
MYRF
ENSSSCG00000013078
ENSG00000124920
Myelin regulatory factor
Group enriched
Detected in many
adipose tissue:
28.3
brain:
62.5
gallbladder:
23.3
mesothelial tissue:
37.1
stomach:
55.6
MZB1
ENSSSCG00000029239
ENSG00000170476
Marginal zone B and B1 cell specific protein
Tissue enhanced
Detected in some
large intestine:
16.3
lung:
16.0
lymphoid tissue:
14.3
small intestine:
18.5
stomach:
20.8
upper respiratory system:
32.6
na
ENSSSCG00000000073
Tissue enhanced
Detected in many
epididymis:
13.6
liver:
13.8
na
ENSSSCG00000000148
Tissue enriched
Detected in all
lymphoid tissue:
51.8
na
ENSSSCG00000000245
ENSG00000170465,ENSG00000205420
Group enriched
Detected in some
mouth:
222.9
skin:
58.5
na
ENSSSCG00000000608
Tissue enhanced
Detected in many
lymphoid tissue:
15.5
na
ENSSSCG00000000629
Tissue enriched
Detected in many
mouth:
56.3
na
ENSSSCG00000000636
Killer cell lectin-like receptor subfamily A, member 1
Low tissue specificity
Detected in many
na
ENSSSCG00000000642
ENSG00000134539
Tissue enhanced
Detected in some
large intestine:
8.8
lung:
7.0
lymphoid tissue:
13.2
na
ENSSSCG00000000664
ENSG00000166535
Tissue enriched
Detected in some
mouth:
129.0
na
ENSSSCG00000000759
Tissue enriched
Detected in many
lens:
87.5
na
ENSSSCG00000000854
ENSG00000136011
Group enriched
Detected in some
liver:
43.3
lymphoid tissue:
11.5
na
ENSSSCG00000000867
Tissue enriched
Detected in some
lymphoid tissue:
134.0
na
ENSSSCG00000000882
ENSG00000185046
Tissue enriched
Detected in many
brain:
64.8
na
ENSSSCG00000000959
ENSG00000133424
Low tissue specificity
Detected in all
na
ENSSSCG00000000983
ENSG00000188263
Tissue enhanced
Detected in many
esophagus:
43.8
male glands:
34.2
salivary gland:
50.3
na
ENSSSCG00000001083
ENSG00000112273
Tissue enriched
Detected in many
testis:
67.0
na
ENSSSCG00000001231
Low tissue specificity
Detected in many
na
ENSSSCG00000001407
ENSG00000204475
Group enriched
Detected in some
kidney:
10.3
lymphoid tissue:
38.4
na
ENSSSCG00000001455
MHC class II histocompatibility antigen SLA-DRB1 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
150.5
na
ENSSSCG00000001456
ENSG00000196735
SLA class II histocompatibility antigen, DQ haplotype D alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
163.6
na
ENSSSCG00000001458
Tissue enhanced
Detected in many
lymphoid tissue:
34.5
na
ENSSSCG00000001500
ENSG00000124749
Tissue enhanced
Detected in many
ductus deferens:
35.8
penis:
26.8
na
ENSSSCG00000001596
ENSG00000124615
Tissue enhanced
Detected in all
kidney:
48.2
liver:
53.3
mouth:
50.4
na
ENSSSCG00000001725
ENSG00000069122
Tissue enhanced
Detected in many
adipose tissue:
60.7
na
ENSSSCG00000001810
ENSG00000073417
Low tissue specificity
Detected in all
na
ENSSSCG00000001850
ENSG00000242498,ENSG00000250021
Arpin
Low tissue specificity
Detected in all
na
ENSSSCG00000002084
Tissue enriched
Detected in some
lymphoid tissue:
15.5
na
ENSSSCG00000002099
Tissue enriched
Detected in some
lymphoid tissue:
32.9
na
ENSSSCG00000002745
Low tissue specificity
Detected in many
na
ENSSSCG00000002849
ENSG00000171241
Tissue enhanced
Detected in many
lymphoid tissue:
22.4
testis:
14.9
upper respiratory system:
12.9
na
ENSSSCG00000002857
ENSG00000173809
Tissue enhanced
Detected in many
testis:
30.3
na
ENSSSCG00000003047
Tissue enriched
Detected in some
large intestine:
291.6
na
ENSSSCG00000003048
ENSG00000189377
Group enriched
Detected in some
lung:
91.0
stomach:
46.7
upper respiratory system:
98.0
na
ENSSSCG00000003049
ENSG00000268041
Tissue enhanced
Detected in many
cartilage:
24.1
lymphoid tissue:
27.8
na
ENSSSCG00000003226
ENSG00000105383
Tissue enriched
Detected in many
lymphoid tissue:
45.2
na
ENSSSCG00000003227
ENSG00000142549
Group enriched
Detected in some
adrenal gland:
14.7
brain:
12.6
lymphoid tissue:
6.4
pineal gland:
5.3
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