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Keyword
Chromosome
1
2
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6
7
8
9
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12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MMGT1
ENSSSCG00000025854
ENSG00000169446
Membrane magnesium transporter 1 precursor
Low tissue specificity
Detected in all
MMP11
ENSSSCG00000010071
ENSG00000099953
Matrix metallopeptidase 11
Low tissue specificity
Detected in all
MMP12
ENSSSCG00000014987
ENSG00000262406
Macrophage metalloelastase precursor
Tissue enriched
Detected in some
lymphoid tissue:
35.0
MMP14
ENSSSCG00000002039
ENSG00000157227
Matrix metallopeptidase 14
Tissue enhanced
Detected in all
cervix:
107.7
ovary:
96.3
MMP15
ENSSSCG00000002806
ENSG00000102996
Matrix metallopeptidase 15
Tissue enhanced
Detected in all
stomach:
61.4
MMP17
ENSSSCG00000024236
ENSG00000198598
Matrix metallopeptidase 17
Group enriched
Detected in some
brain:
18.9
cornea:
6.5
lymphoid tissue:
12.5
pineal gland:
6.2
MMP23B
ENSSSCG00000003351
ENSG00000189409
Matrix metallopeptidase 23B
Tissue enhanced
Detected in many
cartilage:
53.6
MMP9
ENSSSCG00000007436
ENSG00000100985
Matrix metalloproteinase-9 precursor
Tissue enriched
Detected in many
dura mater:
85.1
MMRN2
ENSSSCG00000024048
ENSG00000173269
Multimerin 2
Tissue enhanced
Detected in many
penis:
56.2
MMS22L
ENSSSCG00000004344
ENSG00000146263
MMS22 like, DNA repair protein
Tissue enhanced
Detected in many
lymphoid tissue:
16.1
MND1
ENSSSCG00000009009
ENSG00000121211
Meiotic nuclear divisions 1
Tissue enhanced
Detected in many
lymphoid tissue:
17.8
MOB3C
ENSSSCG00000003897
ENSG00000142961
MOB kinase activator 3C
Low tissue specificity
Detected in many
MPDZ
ENSSSCG00000005191
ENSG00000107186
Multiple PDZ domain crumbs cell polarity complex component
Low tissue specificity
Detected in all
MPP1
ENSSSCG00000012822
ENSG00000130830
Membrane palmitoylated protein 1
Tissue enhanced
Detected in all
small intestine:
55.3
MPP5
ENSSSCG00000002287
ENSG00000072415
Membrane palmitoylated protein 5
Tissue enhanced
Detected in all
thyroid gland:
80.8
MPZL2
ENSSSCG00000015091
ENSG00000149573
Myelin protein zero-like protein 2 precursor
Tissue enhanced
Detected in many
cornea:
52.8
dura mater:
44.6
mouth:
39.8
MRAS
ENSSSCG00000027443
ENSG00000158186
Muscle RAS oncogene homolog
Tissue enhanced
Detected in many
brain:
51.1
MRC1
ENSSSCG00000011038
ENSG00000260314
Macrophage mannose receptor 1 precursor
Tissue enhanced
Detected in many
liver:
26.3
synovial tissue:
36.3
MRC2
ENSSSCG00000017300
ENSG00000011028
Mannose receptor C type 2
Tissue enhanced
Detected in many
cartilage:
91.8
MRGPRF
ENSSSCG00000034441
ENSG00000172935
MAS related GPR family member F
Tissue enhanced
Detected in all
cervix:
49.6
smooth muscle:
55.1
MROH1
ENSSSCG00000005924
ENSG00000179832
Maestro heat like repeat family member 1
Low tissue specificity
Detected in all
MRVI1
ENSSSCG00000020720
ENSG00000072952
Murine retrovirus integration site 1 homolog
Tissue enhanced
Detected in many
smooth muscle:
58.2
MS4A1
ENSSSCG00000021812
ENSG00000156738
B-lymphocyte antigen CD20
Tissue enhanced
Detected in some
lung:
28.1
lymphoid tissue:
79.8
small intestine:
31.3
upper respiratory system:
52.6
MSC
ENSSSCG00000006187
ENSG00000178860
Musculin
Tissue enhanced
Detected in many
lymphoid tissue:
35.8
MSI1
ENSSSCG00000029365
ENSG00000135097
RNA-binding protein Musashi homolog 1
Tissue enhanced
Detected in all
lens:
43.9
retina:
48.9
MSI2
ENSSSCG00000038505
ENSG00000153944
RNA-binding protein Musashi homolog 2
Low tissue specificity
Detected in all
MSR1
ENSSSCG00000006979
ENSG00000038945
Macrophage scavenger receptor types I and II
Low tissue specificity
Detected in all
MSRB3
ENSSSCG00000026004
ENSG00000174099
Methionine sulfoxide reductase B3
Tissue enhanced
Detected in many
smooth muscle:
70.8
MSX1
ENSSSCG00000008727
ENSG00000163132
Homeobox protein MSX-1
Tissue enhanced
Detected in many
choroid plexus:
36.0
endometrium:
42.5
penis:
30.6
MTBP
ENSSSCG00000005995
ENSG00000172167
MDM2 binding protein
Tissue enhanced
Detected in many
lymphoid tissue:
14.9
MTCL1
ENSSSCG00000003684
ENSG00000168502
Microtubule crosslinking factor 1
Low tissue specificity
Detected in all
MTF2
ENSSSCG00000006898
ENSG00000143033
Metal response element binding transcription factor 2
Tissue enriched
Detected in all
lymphoid tissue:
77.4
MTFR2
ENSSSCG00000004164
ENSG00000146410
Mitochondrial fission regulator 2
Low tissue specificity
Detected in all
MTSS1L
ENSSSCG00000040037
ENSG00000132613
MTSS1L, I-BAR domain containing
Low tissue specificity
Detected in all
MTUS1
ENSSSCG00000040013
ENSG00000129422
Microtubule associated scaffold protein 1
Low tissue specificity
Detected in all
MXRA7
ENSSSCG00000037376
ENSG00000182534
Matrix remodeling associated 7
Low tissue specificity
Detected in all
MXRA8
ENSSSCG00000021880
ENSG00000162576
Matrix remodeling associated 8
Low tissue specificity
Detected in all
MYB
ENSSSCG00000004167
ENSG00000118513
MYB proto-oncogene, transcription factor
Tissue enriched
Detected in many
lymphoid tissue:
99.9
MYBL1
ENSSSCG00000027872
ENSG00000185697
MYB proto-oncogene like 1
Tissue enhanced
Detected in many
lymphoid tissue:
44.4
penis:
18.7
MYBL2
ENSSSCG00000007366
ENSG00000101057
Myb-related protein B
Tissue enhanced
Detected in many
lymphoid tissue:
50.3
stomach:
31.0
upper respiratory system:
36.3
MYBPC1
ENSSSCG00000000866
ENSG00000196091
Myosin binding protein C, slow type
Tissue enriched
Detected in some
skeletal muscle:
331.7
MYBPC2
ENSSSCG00000003218
ENSG00000086967
Myosin binding protein C, fast type
Tissue enriched
Detected in some
skeletal muscle:
260.4
MYBPHL
ENSSSCG00000006834
ENSG00000221986
Myosin binding protein H like
Tissue enriched
Detected in all
epididymis:
41.7
MYEF2
ENSSSCG00000004661
ENSG00000104177
Myelin expression factor 2
Low tissue specificity
Detected in many
MYH11
ENSSSCG00000000146
ENSG00000133392
Myosin heavy chain 11
Tissue enhanced
Detected in many
ductus deferens:
178.9
smooth muscle:
565.6
urinary bladder:
187.5
MYH14
ENSSSCG00000027407
ENSG00000105357
Myosin heavy chain 14
Tissue enhanced
Detected in many
cornea:
86.4
large intestine:
64.0
stomach:
61.9
MYH2
ENSSSCG00000029441
ENSG00000125414
Myosin-2
Tissue enriched
Detected in some
skeletal muscle:
505.3
MYL1
ENSSSCG00000016157
ENSG00000168530
Myosin light chain 1/3, skeletal muscle isoform
Tissue enriched
Detected in some
skeletal muscle:
477.7
MYL6
ENSSSCG00000039795
ENSG00000092841
Myosin light polypeptide 6
Tissue enhanced
Detected in all
smooth muscle:
405.0
MYL9
ENSSSCG00000036402
ENSG00000101335
Myosin regulatory light polypeptide 9
Tissue enhanced
Detected in many
smooth muscle:
241.8
urinary bladder:
100.0
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