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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LTA
ENSSSCG00000001403
ENSG00000226979
Lymphotoxin-alpha
Tissue enhanced
Detected in many
lymphoid tissue:
29.5
upper respiratory system:
8.7
LTB
ENSSSCG00000001405
ENSG00000227507
Lymphotoxin-beta
Tissue enriched
Detected in many
lymphoid tissue:
56.3
LTB4R2
ENSSSCG00000020941
ENSG00000213906
Leukotriene B4 receptor 2
Tissue enhanced
Detected in many
lymphoid tissue:
24.9
LTBP2
ENSSSCG00000002368
ENSG00000119681
Latent transforming growth factor beta binding protein 2
Tissue enhanced
Detected in many
mesothelial tissue:
67.7
LTBP4
ENSSSCG00000033760
ENSG00000090006
Latent transforming growth factor beta binding protein 4
Low tissue specificity
Detected in many
LTBR
ENSSSCG00000000706
ENSG00000111321
Tumor necrosis factor receptor superfamily member 3 precursor
Low tissue specificity
Detected in all
LTC4S
ENSSSCG00000028488
ENSG00000213316
Leukotriene C4 synthase
Tissue enhanced
Detected in many
liver:
56.7
lymphoid tissue:
21.7
LUM
ENSSSCG00000000916
ENSG00000139329
Lumican precursor
Tissue enhanced
Detected in many
cornea:
60.7
dura mater:
57.2
synovial tissue:
57.4
LURAP1L
ENSSSCG00000036360
ENSG00000153714
Leucine rich adaptor protein 1 like
Low tissue specificity
Detected in many
LY75
ENSSSCG00000021956
ENSG00000054219,ENSG00000248672
Lymphocyte antigen 75 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
56.9
LY86
ENSSSCG00000032355
ENSG00000112799
Lymphocyte antigen 86 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
46.7
LY9
ENSSSCG00000006375
ENSG00000122224
Lymphocyte antigen 9
Tissue enriched
Detected in many
lymphoid tissue:
54.7
LYN
ENSSSCG00000006250
ENSG00000254087
LYN proto-oncogene, Src family tyrosine kinase
Tissue enhanced
Detected in many
lymphoid tissue:
47.7
LYNX1
ENSSSCG00000031724
ENSG00000180155
Ly6/neurotoxin 1
Tissue enhanced
Detected in many
brain:
43.6
heart:
43.9
LYPD1
ENSSSCG00000035102
ENSG00000150551
Ly6/PLAUR domain-containing protein 1 precursor
Tissue enhanced
Detected in many
brain:
33.3
thyroid gland:
15.2
LYPD3
ENSSSCG00000003062
ENSG00000124466
LY6/PLAUR domain containing 3
Group enriched
Detected in some
cornea:
51.4
mouth:
55.6
skin:
24.5
LYVE1
ENSSSCG00000029886
ENSG00000133800
Lymphatic vessel endothelial hyaluronan receptor 1
Low tissue specificity
Detected in all
LYZ
ENSSSCG00000000492
ENSG00000090382
Lysozyme C-3 precursor
Tissue enhanced
Detected in many
large intestine:
87.6
small intestine:
117.4
stomach:
158.7
LZTS1
ENSSSCG00000028559
ENSG00000061337
Leucine zipper tumor suppressor 1
Group enriched
Detected in many
brain:
34.3
lymphoid tissue:
15.2
LZTS2
ENSSSCG00000021798
ENSG00000107816
Leucine zipper tumor suppressor 2
Low tissue specificity
Detected in all
LZTS3
ENSSSCG00000007161
ENSG00000088899
Leucine zipper tumor suppressor family member 3
Tissue enhanced
Detected in all
brain:
44.5
MACROD1
ENSSSCG00000013043
ENSG00000133315
O-acetyl-ADP-ribose deacetylase MACROD1
Group enriched
Detected in many
heart:
46.2
skeletal muscle:
149.0
MADD
ENSSSCG00000013235
ENSG00000110514
MAP kinase activating death domain
Low tissue specificity
Detected in all
MAF
ENSSSCG00000040607
ENSG00000178573
MAF bZIP transcription factor
Tissue enhanced
Detected in all
lens:
134.2
MAFB
ENSSSCG00000032251
ENSG00000204103
MAF bZIP transcription factor B
Tissue enhanced
Detected in many
lymphoid tissue:
125.0
synovial tissue:
119.6
MAL2
ENSSSCG00000006003
ENSG00000147676
Protein MAL2
Tissue enhanced
Detected in many
brain:
38.7
MAMLD1
ENSSSCG00000012741
ENSG00000013619
Mastermind like domain containing 1
Tissue enhanced
Detected in many
epididymis:
55.4
MAN2A2
ENSSSCG00000001819
ENSG00000196547
Mannosidase alpha class 2A member 2
Low tissue specificity
Detected in all
MANSC1
ENSSSCG00000040835
ENSG00000111261
MANSC domain containing 1
Tissue enhanced
Detected in all
male glands:
78.7
MANSC4
ENSSSCG00000000546
ENSG00000205693
MANSC domain containing 4
Low tissue specificity
Detected in all
MAOA
ENSSSCG00000012257
ENSG00000189221
Amine oxidase
Low tissue specificity
Detected in many
MAOB
ENSSSCG00000023215
ENSG00000069535
Amine oxidase
Tissue enhanced
Detected in many
liver:
102.0
ovary:
41.3
MAP10
ENSSSCG00000010167
ENSG00000212916
Microtubule associated protein 10
Low tissue specificity
Detected in all
MAP1A
ENSSSCG00000004705
ENSG00000166963
Microtubule associated protein 1A
Tissue enriched
Detected in many
brain:
71.4
MAP1B
ENSSSCG00000016974
ENSG00000131711
Microtubule associated protein 1B
Tissue enhanced
Detected in many
brain:
87.9
ovary:
44.6
MAP2
ENSSSCG00000016151
ENSG00000078018
Microtubule associated protein 2
Tissue enhanced
Detected in many
brain:
87.1
pineal gland:
30.2
pituitary gland:
23.3
retina:
21.2
MAP3K5
ENSSSCG00000026041
ENSG00000197442
Mitogen-activated protein kinase kinase kinase 5
Low tissue specificity
Detected in all
MAP3K6
ENSSSCG00000003573
ENSG00000142733
Mitogen-activated protein kinase kinase kinase 6
Tissue enhanced
Detected in many
skin:
24.1
MAP3K9
ENSSSCG00000002329
ENSG00000006432
Mitogen-activated protein kinase kinase kinase 9
Tissue enhanced
Detected in many
brain:
25.6
MAP4K3
ENSSSCG00000008475
ENSG00000011566
Mitogen-activated protein kinase kinase kinase kinase 3
Low tissue specificity
Detected in all
MAP4K4
ENSSSCG00000008164
ENSG00000071054
Mitogen-activated protein kinase kinase kinase kinase 4
Tissue enhanced
Detected in all
brain:
85.8
MAP4K5
ENSSSCG00000036634
ENSG00000012983
Mitogen-activated protein kinase kinase kinase kinase 5
Low tissue specificity
Detected in all
MAP7
ENSSSCG00000039049
ENSG00000135525
Microtubule associated protein 7
Tissue enhanced
Detected in many
pineal gland:
113.3
MAPK11
ENSSSCG00000033171
ENSG00000185386
Mitogen-activated protein kinase 11
Tissue enhanced
Detected in many
brain:
13.1
MAPK12
ENSSSCG00000032693
ENSG00000188130
Mitogen-activated protein kinase 12
Tissue enhanced
Detected in many
heart:
32.5
male glands:
29.9
skeletal muscle:
52.9
MAPK4
ENSSSCG00000004520
ENSG00000141639
Mitogen-activated protein kinase 4
Tissue enhanced
Detected in many
brain:
31.5
choroid plexus:
72.0
MAPRE3
ENSSSCG00000029185
ENSG00000084764
Microtubule associated protein RP/EB family member 3
Tissue enhanced
Detected in all
brain:
50.1
MARCH1
ENSSSCG00000039175
ENSG00000145416
Membrane associated ring-CH-type finger 1
Tissue enhanced
Detected in many
lymphoid tissue:
20.1
retina:
20.3
MARCH2
ENSSSCG00000013601
ENSG00000099785
E3 ubiquitin-protein ligase MARCH2
Low tissue specificity
Detected in all
MARCKS
ENSSSCG00000037803
ENSG00000277443
Myristoylated alanine rich protein kinase C substrate
Tissue enhanced
Detected in all
lymphoid tissue:
134.8
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