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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
A2M
ENSSSCG00000000660
ENSG00000175899
Alpha-2-macroglobulin
Tissue enhanced
Detected in many
adrenal gland:
238.9
liver:
109.4
testis:
79.2
A4GALT
ENSSSCG00000026962
ENSG00000128274
Alpha 1,4-galactosyltransferase (P blood group)
Low tissue specificity
Detected in many
AARD
ENSSSCG00000006013
ENSG00000205002
Alanine and arginine rich domain containing protein
Tissue enhanced
Detected in some
choroid plexus:
22.4
lymphoid tissue:
11.8
testis:
20.4
ABCA3
ENSSSCG00000008051
ENSG00000167972
ATP binding cassette subfamily A member 3
Tissue enhanced
Detected in all
lung:
28.6
ABCA5
ENSSSCG00000017255
ENSG00000154265
ATP binding cassette subfamily A member 5
Tissue enhanced
Detected in all
epididymis:
39.2
ABCA7
ENSSSCG00000023121
ENSG00000064687
ATP binding cassette subfamily A member 7
Tissue enhanced
Detected in many
lymphoid tissue:
29.4
ABCA8
ENSSSCG00000026473
ENSG00000141338
ATP binding cassette subfamily A member 8
Tissue enhanced
Detected in many
liver:
61.6
vagus nerve:
33.1
ABCA9
ENSSSCG00000017257
ENSG00000154258
ATP binding cassette subfamily A member 9
Tissue enhanced
Detected in many
vagus nerve:
43.9
ABCC5
ENSSSCG00000011782
ENSG00000114770
ATP binding cassette subfamily C member 5
Tissue enhanced
Detected in all
lymphoid tissue:
75.2
ABCC9
ENSSSCG00000000571
ENSG00000069431
ATP binding cassette subfamily C member 9
Tissue enhanced
Detected in many
heart:
57.6
skeletal muscle:
40.3
ABCD1
ENSSSCG00000012779
ENSG00000101986
ATP binding cassette subfamily D member 1
Low tissue specificity
Detected in all
ABHD12
ENSSSCG00000040449
ENSG00000100997
Abhydrolase domain containing 12
Tissue enhanced
Detected in all
epididymis:
34.9
lens:
116.2
ABHD17C
ENSSSCG00000001782
ENSG00000136379
Abhydrolase domain containing 17C
Tissue enhanced
Detected in many
large intestine:
39.8
male glands:
50.9
ABI3BP
ENSSSCG00000011959
ENSG00000154175
ABI family member 3 binding protein
Group enriched
Detected in many
cartilage:
276.5
penis:
99.9
ABLIM3
ENSSSCG00000014430
ENSG00000173210
Actin binding LIM protein family member 3
Tissue enhanced
Detected in many
brain:
53.4
ABTB2
ENSSSCG00000013303
ENSG00000166016
Ankyrin repeat and BTB domain containing 2
Low tissue specificity
Detected in all
ACACB
ENSSSCG00000009937
ENSG00000076555
Acetyl-CoA carboxylase 2 precursor
Tissue enhanced
Detected in many
heart:
31.7
male glands:
64.1
salivary gland:
45.8
skeletal muscle:
31.3
ACCS
ENSSSCG00000013282
ENSG00000110455
1-aminocyclopropane-1-carboxylate synthase homolog (inactive)
Low tissue specificity
Detected in all
ACE
ENSSSCG00000017296
ENSG00000159640
Angiotensin-converting enzyme isoform 1 precursor
Tissue enhanced
Detected in many
testis:
102.1
ACHE
ENSSSCG00000030303
ENSG00000087085
Acetylcholinesterase (Cartwright blood group)
Tissue enriched
Detected in many
brain:
39.3
ACKR2
ENSSSCG00000031154
ENSG00000144648
Atypical chemokine receptor 2
Tissue enhanced
Detected in many
mesothelial tissue:
23.7
synovial tissue:
69.1
ACKR3
ENSSSCG00000016322
ENSG00000144476
Atypical chemokine receptor 3
Tissue enhanced
Detected in all
cartilage:
106.7
ACKR4
ENSSSCG00000011630
ENSG00000129048
Atypical chemokine receptor 4
Tissue enhanced
Detected in many
adipose tissue:
28.7
ovary:
33.6
ACOD1
ENSSSCG00000009469
ENSG00000102794
Aconitate decarboxylase 1
Tissue enhanced
Detected in all
lymphoid tissue:
19.0
ACOT11
ENSSSCG00000037559
ENSG00000162390
Acyl-CoA thioesterase 11
Low tissue specificity
Detected in many
ACP2
ENSSSCG00000013242
ENSG00000134575
Lysosomal acid phosphatase precursor
Low tissue specificity
Detected in all
ACTA1
ENSSSCG00000010190
ENSG00000143632
Actin, alpha skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
1900.3
ACTA2
ENSSSCG00000010447
ENSG00000107796
Actin, aortic smooth muscle
Tissue enhanced
Detected in many
ductus deferens:
294.9
endometrium:
265.1
penis:
206.0
ACTG2
ENSSSCG00000008294
ENSG00000163017
Actin, gamma 2, smooth muscle, enteric
Tissue enriched
Detected in many
smooth muscle:
747.6
ACTN1
ENSSSCG00000036702
ENSG00000072110
Alpha-actinin-1
Tissue enhanced
Detected in all
smooth muscle:
150.4
ACTN3
ENSSSCG00000038323
ENSG00000248746
Actinin alpha 3 (gene/pseudogene)
Tissue enriched
Detected in some
skeletal muscle:
250.4
ACTR3B
ENSSSCG00000016426
ENSG00000133627
ARP3 actin related protein 3 homolog B
Low tissue specificity
Detected in all
ACVR2B
ENSSSCG00000011257
ENSG00000114739
Activin receptor type-2B precursor
Tissue enhanced
Detected in all
skeletal muscle:
35.6
ACVRL1
ENSSSCG00000000232
ENSG00000139567
Activin A receptor like type 1
Low tissue specificity
Detected in many
ADA
ENSSSCG00000021255
ENSG00000196839
Adenosine deaminase
Tissue enhanced
Detected in many
mouth:
124.3
small intestine:
43.7
stomach:
31.6
ADA2
ENSSSCG00000035218
ENSG00000093072
Adenosine deaminase 2 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
41.2
ADAM15
ENSSSCG00000006533
ENSG00000143537
ADAM metallopeptidase domain 15
Low tissue specificity
Detected in all
ADAM19
ENSSSCG00000017052
ENSG00000135074
ADAM metallopeptidase domain 19
Low tissue specificity
Detected in many
ADAM22
ENSSSCG00000015297
ENSG00000008277
ADAM metallopeptidase domain 22
Tissue enriched
Detected in many
brain:
51.4
ADAM33
ENSSSCG00000007145
ENSG00000149451
ADAM metallopeptidase domain 33
Tissue enhanced
Detected in many
cervix:
43.8
mesothelial tissue:
42.3
ADAMDEC1
ENSSSCG00000009645
ENSG00000134028
ADAM like decysin 1
Group enriched
Detected in some
large intestine:
55.7
ovary:
68.6
small intestine:
18.5
ADAMTS1
ENSSSCG00000012026
ENSG00000154734
A disintegrin and metalloproteinase with thrombospondin motifs 1 precursor
Tissue enhanced
Detected in many
aorta:
54.6
gallbladder:
47.1
mesothelial tissue:
50.9
ADAMTS17
ENSSSCG00000038452
ENSG00000140470
ADAM metallopeptidase with thrombospondin type 1 motif 17
Tissue enriched
Detected in many
lens:
63.4
ADAMTS2
ENSSSCG00000024043
ENSG00000087116
ADAM metallopeptidase with thrombospondin type 1 motif 2
Tissue enhanced
Detected in many
mesothelial tissue:
31.9
ADAMTS5
ENSSSCG00000012027
ENSG00000154736
ADAM metallopeptidase with thrombospondin type 1 motif 5
Tissue enhanced
Detected in many
adipose tissue:
42.4
cervix:
32.1
ADAMTS7
ENSSSCG00000001765
ENSG00000136378
ADAM metallopeptidase with thrombospondin type 1 motif 7
Tissue enhanced
Detected in many
heart:
47.8
ADAMTSL3
ENSSSCG00000001793
ENSG00000156218
ADAMTS like 3
Tissue enriched
Detected in many
cartilage:
99.8
ADAMTSL4
ENSSSCG00000006651
ENSG00000143382
ADAMTS like 4
Tissue enhanced
Detected in many
cartilage:
56.3
ADAP2
ENSSSCG00000017738
ENSG00000184060
Arf-GAP with dual PH domain-containing protein 2
Low tissue specificity
Detected in all
ADARB1
ENSSSCG00000012089
ENSG00000197381
Adenosine deaminase, RNA specific B1
Low tissue specificity
Detected in all
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