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Human disease related genes
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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113 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCA12
ENSSSCG00000034282
ENSG00000144452
ATP binding cassette subfamily A member 12
Tissue enhanced
Detected in some
epididymis:
8.7
large intestine:
17.5
skin:
26.0
testis:
6.2
ADAM12
ENSSSCG00000010746
ENSG00000148848
ADAM metallopeptidase domain 12
Tissue enhanced
Detected in many
ovary:
64.8
ADCY1
ENSSSCG00000016726
ENSG00000164742
Adenylate cyclase 1
Group enriched
Detected in some
brain:
51.5
lens:
21.6
retina:
23.4
AQP8
ENSSSCG00000031865
ENSG00000103375
Aquaporin-8
Tissue enhanced
Detected in all
large intestine:
45.0
B3GNT3
ENSSSCG00000013886
ENSG00000179913
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3
Tissue enhanced
Detected in many
male glands:
34.7
stomach:
49.8
B3GNT7
ENSSSCG00000033015
ENSG00000156966
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
Tissue enhanced
Detected in all
cornea:
31.8
large intestine:
40.0
lens:
33.5
BAIAP2L2
ENSSSCG00000000111
ENSG00000128298
BAI1 associated protein 2 like 2
Tissue enhanced
Detected in many
epididymis:
25.4
kidney:
40.6
large intestine:
45.5
small intestine:
45.7
C11orf86
ENSSSCG00000040729
ENSG00000173237
Chromosome 11 open reading frame 86
Group enriched
Detected in some
large intestine:
41.5
small intestine:
30.0
CA1
ENSSSCG00000040770
ENSG00000133742
Carbonic anhydrase 1
Tissue enriched
Detected in some
large intestine:
179.5
CA2
ENSSSCG00000006140
ENSG00000104267
Carbonic anhydrase 2
Tissue enhanced
Detected in many
choroid plexus:
70.9
stomach:
149.1
CA7
ENSSSCG00000038785
ENSG00000168748
Carbonic anhydrase 7
Tissue enhanced
Detected in some
brain:
15.2
large intestine:
32.9
pineal gland:
8.1
salivary gland:
9.2
small intestine:
16.3
CALN1
ENSSSCG00000007730
ENSG00000183166
Calneuron 1
Tissue enriched
Detected in some
adrenal gland:
82.4
CAPN13
ENSSSCG00000020986
ENSG00000162949
Calpain 13
Group enriched
Detected in some
stomach:
44.5
upper respiratory system:
61.9
CDH3
ENSSSCG00000023162
ENSG00000062038
Cadherin 3
Tissue enhanced
Detected in many
choroid plexus:
29.6
kidney:
32.5
thyroid gland:
48.9
CLDN8
ENSSSCG00000012030
ENSG00000156284
Claudin-8
Tissue enhanced
Detected in many
breast:
64.0
kidney:
44.5
male glands:
37.7
thyroid gland:
54.2
CLIP4
ENSSSCG00000008535
ENSG00000115295
CAP-Gly domain containing linker protein family member 4
Tissue enhanced
Detected in many
testis:
43.0
vagus nerve:
34.0
COL8A1
ENSSSCG00000011973
ENSG00000144810
Collagen type VIII alpha 1 chain
Tissue enhanced
Detected in many
cartilage:
78.5
cornea:
48.6
dura mater:
40.6
CWH43
ENSSSCG00000008830
ENSG00000109182
Cell wall biogenesis 43 C-terminal homolog
Tissue enhanced
Detected in some
endometrium:
23.7
large intestine:
9.7
mouth:
22.8
DUOX2
ENSSSCG00000004678
ENSG00000140279
Dual oxidase 2 precursor
Group enriched
Detected in many
gallbladder:
21.4
large intestine:
37.0
stomach:
52.0
thyroid gland:
72.5
upper respiratory system:
24.4
DUOXA1
ENSSSCG00000004677
ENSG00000140254
Dual oxidase maturation factor 1
Tissue enhanced
Detected in many
mouth:
24.3
stomach:
29.6
thyroid gland:
46.7
DUOXA2
ENSSSCG00000004676
ENSG00000140274
Dual oxidase maturation factor 2
Tissue enhanced
Detected in many
large intestine:
30.1
stomach:
34.1
thyroid gland:
45.4
upper respiratory system:
28.0
ENPEP
ENSSSCG00000009132
ENSG00000138792
Glutamyl aminopeptidase
Group enriched
Detected in many
kidney:
65.2
small intestine:
88.1
FAM43B
ENSSSCG00000030706
ENSG00000183114
Family with sequence similarity 43 member B
Tissue enhanced
Detected in many
kidney:
23.9
male glands:
20.7
stomach:
22.1
FRZB
ENSSSCG00000016018
ENSG00000162998
Secreted frizzled-related protein 3 precursor
Tissue enhanced
Detected in many
heart:
72.7
pineal gland:
62.3
GALNT18
ENSSSCG00000013403
ENSG00000110328
Polypeptide N-acetylgalactosaminyltransferase 18
Tissue enriched
Detected in many
cartilage:
84.5
GJB1
ENSSSCG00000012394
ENSG00000169562
Gap junction protein beta 1
Tissue enhanced
Detected in many
epididymis:
101.6
liver:
97.0
male glands:
100.9
GLB1L2
ENSSSCG00000015258
ENSG00000149328
Galactosidase beta 1 like 2
Group enriched
Detected in many
epididymis:
120.8
thyroid gland:
84.9
GPRC5A
ENSSSCG00000029592
ENSG00000013588
G protein-coupled receptor class C group 5 member A
Tissue enhanced
Detected in many
cartilage:
35.0
large intestine:
51.4
lung:
52.1
synovial tissue:
47.7
GUCA2B
ENSSSCG00000003970
ENSG00000044012
Guanylate cyclase activator 2B Uroguanylin
Group enriched
Detected in some
large intestine:
161.2
small intestine:
58.5
HAS3
ENSSSCG00000035601
ENSG00000103044
Hyaluronan synthase 3
Tissue enhanced
Detected in all
male glands:
26.4
HEPACAM2
ENSSSCG00000025870
ENSG00000188175
HEPACAM family member 2
Tissue enhanced
Detected in all
large intestine:
36.4
pituitary gland:
41.9
HMGCS2
ENSSSCG00000036808
ENSG00000134240
Hydroxymethylglutaryl-CoA synthase, mitochondrial
Tissue enriched
Detected in all
large intestine:
116.1
HOXA13
ENSSSCG00000029666
ENSG00000106031
Homeobox protein Hox-A13
Tissue enhanced
Detected in some
cervix:
54.1
male glands:
25.8
urinary bladder:
31.9
HOXB13
ENSSSCG00000017541
ENSG00000159184
Homeobox B13
Group enriched
Detected in some
large intestine:
46.2
male glands:
70.8
HOXC6
ENSSSCG00000030585
ENSG00000197757
Homeobox C6
Tissue enhanced
Detected in many
breast:
26.7
kidney:
36.7
HOXD13
ENSSSCG00000015979
ENSG00000128714
Homeobox D13
Tissue enhanced
Detected in some
cervix:
20.0
large intestine:
11.3
male glands:
30.5
penis:
13.1
smooth muscle:
21.9
urinary bladder:
12.0
HSD17B2
ENSSSCG00000038221
ENSG00000086696
Estradiol 17-beta-dehydrogenase 2
Tissue enhanced
Detected in many
cornea:
40.1
lens:
26.6
liver:
26.1
upper respiratory system:
23.7
urinary bladder:
41.4
IGFBP6
ENSSSCG00000000261
ENSG00000167779
Insulin-like growth factor-binding protein 6 precursor
Tissue enhanced
Detected in many
cornea:
61.7
dura mater:
86.9
INSL5
ENSSSCG00000031956
ENSG00000172410
Insulin like 5
Tissue enriched
Detected in some
large intestine:
29.2
KLHDC7A
ENSSSCG00000023732
ENSG00000179023
Kelch domain containing 7A
Tissue enhanced
Detected in many
epididymis:
27.1
kidney:
27.2
male glands:
54.8
KLK1
ENSSSCG00000024668
Kallikrein-1 precursor
Tissue enriched
Detected in some
salivary gland:
400.8
LCN1
ENSSSCG00000035964
ENSG00000160349
Lipocalin-1 precursor
Group enriched
Detected in some
esophagus:
521.6
upper respiratory system:
1195.4
LGALS2
ENSSSCG00000021728
ENSG00000100079
Galectin-2
Tissue enriched
Detected in some
gallbladder:
273.1
LYZ
ENSSSCG00000000492
ENSG00000090382
Lysozyme C-3 precursor
Tissue enhanced
Detected in many
large intestine:
87.6
small intestine:
117.4
stomach:
158.7
MSMB
ENSSSCG00000010400
ENSG00000263639
Beta-microseminoprotein precursor
Tissue enriched
Detected in some
male glands:
2458.8
na
ENSSSCG00000002709
ENSG00000135702,ENSG00000183196
Tissue enriched
Detected in many
cornea:
67.0
na
ENSSSCG00000003011
Tissue enriched
Detected in some
large intestine:
181.3
na
ENSSSCG00000003048
ENSG00000189377
Group enriched
Detected in some
lung:
91.0
stomach:
46.7
upper respiratory system:
98.0
na
ENSSSCG00000006716
Group enriched
Detected in some
large intestine:
51.6
liver:
16.0
na
ENSSSCG00000006931
Tissue enriched
Detected in some
small intestine:
56.1
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