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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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332 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AARD
ENSSSCG00000006013
ENSG00000205002
Alanine and arginine rich domain containing protein
Tissue enhanced
Detected in some
choroid plexus:
22.4
lymphoid tissue:
11.8
testis:
20.4
ABCC8
ENSSSCG00000013378
ENSG00000006071
ATP binding cassette subfamily C member 8
Group enriched
Detected in some
brain:
17.6
vagus nerve:
57.7
ADAMTS17
ENSSSCG00000038452
ENSG00000140470
ADAM metallopeptidase with thrombospondin type 1 motif 17
Tissue enriched
Detected in many
lens:
63.4
ADAMTS19
ENSSSCG00000014259
ENSG00000145808
ADAM metallopeptidase with thrombospondin type 1 motif 19
Tissue enhanced
Detected in many
adrenal gland:
31.3
cervix:
46.0
lens:
28.4
ADAMTS20
ENSSSCG00000000795
ENSG00000173157
A disintegrin and metalloproteinase with thrombospondin motifs 20 precursor
Tissue enhanced
Detected in many
heart:
36.3
pineal gland:
27.4
vagus nerve:
37.2
ADAMTS4
ENSSSCG00000006359
ENSG00000158859
ADAM metallopeptidase with thrombospondin type 1 motif 4
Group enriched
Detected in many
aorta:
56.1
mesothelial tissue:
84.5
ADAMTS6
ENSSSCG00000016943
ENSG00000049192
ADAM metallopeptidase with thrombospondin type 1 motif 6
Tissue enhanced
Detected in all
cartilage:
53.8
ADAMTS7
ENSSSCG00000001765
ENSG00000136378
ADAM metallopeptidase with thrombospondin type 1 motif 7
Tissue enhanced
Detected in many
heart:
47.8
ADAMTSL5
ENSSSCG00000013433
ENSG00000185761
ADAMTS like 5
Tissue enhanced
Detected in many
heart:
40.7
ADRA1A
ENSSSCG00000009661
ENSG00000120907
Alpha-1A adrenergic receptor
Tissue enhanced
Detected in many
liver:
72.1
AEBP1
ENSSSCG00000016754
ENSG00000106624
AE binding protein 1
Tissue enhanced
Detected in many
adrenal gland:
149.5
ALOX15
ENSSSCG00000017923
ENSG00000161905
Arachidonate 15-lipoxygenase
Tissue enriched
Detected in many
mesothelial tissue:
243.3
AMT
ENSSSCG00000022975
ENSG00000145020
Aminomethyltransferase, mitochondrial
Tissue enhanced
Detected in many
lens:
24.0
liver:
17.8
ANK1
ENSSSCG00000007022
ENSG00000029534
Ankyrin 1
Group enriched
Detected in many
brain:
25.8
heart:
50.3
skeletal muscle:
67.1
APCDD1
ENSSSCG00000039797
ENSG00000154856
APC down-regulated 1
Tissue enhanced
Detected in all
epididymis:
55.5
ARNT2
ENSSSCG00000040288
ENSG00000172379
Aryl hydrocarbon receptor nuclear translocator 2
Tissue enhanced
Detected in many
brain:
40.4
cornea:
43.5
epididymis:
27.7
ARPP21
ENSSSCG00000011238
ENSG00000172995
CAMP regulated phosphoprotein 21
Group enriched
Detected in some
brain:
43.2
lymphoid tissue:
74.2
skeletal muscle:
35.5
ARSE
ENSSSCG00000022129
ENSG00000157399
Arylsulfatase E precursor
Tissue enhanced
Detected in many
cartilage:
24.1
ASB11
ENSSSCG00000012133
ENSG00000165192
Ankyrin repeat and SOCS box protein 11 isoform a
Group enriched
Detected in some
ductus deferens:
23.4
epididymis:
19.8
heart:
29.6
skeletal muscle:
51.5
ASB18
ENSSSCG00000016318
ENSG00000182177
Ankyrin repeat and SOCS box containing 18
Group enriched
Detected in some
heart:
24.6
skeletal muscle:
30.5
ATP4B
ENSSSCG00000009561
ENSG00000186009
Potassium-transporting ATPase subunit beta
Group enriched
Detected in some
heart:
11.8
stomach:
46.9
B3GALT2
ENSSSCG00000010800
ENSG00000162630
Beta-1,3-galactosyltransferase 2
Tissue enhanced
Detected in many
heart:
47.6
large intestine:
24.5
male glands:
32.7
B4GALT6
ENSSSCG00000025005
ENSG00000118276
Beta-1,4-galactosyltransferase 6
Tissue enhanced
Detected in many
brain:
26.8
cartilage:
11.4
ovary:
13.8
pituitary gland:
12.2
BEX3
ENSSSCG00000012528
ENSG00000166681
Protein BEX3 isoform a
Tissue enhanced
Detected in many
brain:
49.3
lens:
53.2
pineal gland:
49.5
pituitary gland:
57.4
BGN
ENSSSCG00000012766
ENSG00000182492
Biglycan
Tissue enhanced
Detected in many
cartilage:
481.4
synovial tissue:
137.3
BHLHE22
ENSSSCG00000006222
ENSG00000180828
Basic helix-loop-helix family member e22
Tissue enhanced
Detected in many
brain:
36.6
BICDL1
ENSSSCG00000009896
ENSG00000135127
BICD family like cargo adaptor 1
Tissue enhanced
Detected in many
epididymis:
91.2
mesothelial tissue:
29.5
BMP5
ENSSSCG00000001478
ENSG00000112175
Bone morphogenetic protein 5
Tissue enhanced
Detected in many
cartilage:
25.1
thyroid gland:
42.2
C2orf88
ENSSSCG00000033941
ENSG00000187699
Chromosome 2 open reading frame 88
Tissue enhanced
Detected in all
heart:
57.9
CACNA2D2
ENSSSCG00000011412
ENSG00000007402
Calcium voltage-gated channel auxiliary subunit alpha2delta 2
Tissue enhanced
Detected in many
brain:
20.8
urinary bladder:
23.7
CAMK1D
ENSSSCG00000011111
ENSG00000183049
Calcium/calmodulin-dependent protein kinase type 1D
Tissue enhanced
Detected in many
epididymis:
48.3
CCK
ENSSSCG00000011277
ENSG00000187094
Cholecystokinin precursor
Group enriched
Detected in some
brain:
94.4
heart:
73.4
CDH1
ENSSSCG00000025652
ENSG00000039068
Cadherin-1 precursor
Tissue enhanced
Detected in many
male glands:
78.6
CDH11
ENSSSCG00000002795
ENSG00000140937
Cadherin-11 preproprotein
Tissue enhanced
Detected in many
dura mater:
51.5
CDH18
ENSSSCG00000026842
ENSG00000145526
Cadherin 18
Group enriched
Detected in some
brain:
25.7
pineal gland:
55.4
CEND1
ENSSSCG00000012845
ENSG00000184524
Cell cycle exit and neuronal differentiation protein 1
Tissue enhanced
Detected in some
brain:
53.1
pineal gland:
20.0
retina:
11.6
CFTR
ENSSSCG00000016626
ENSG00000001626
Cystic fibrosis transmembrane conductance regulator
Tissue enhanced
Detected in many
large intestine:
16.2
small intestine:
43.3
CGN
ENSSSCG00000006621
ENSG00000143375
Cingulin
Tissue enhanced
Detected in many
stomach:
50.2
CGNL1
ENSSSCG00000035038
ENSG00000128849
Cingulin like 1
Tissue enhanced
Detected in many
kidney:
62.8
thyroid gland:
72.5
CHGA
ENSSSCG00000002456
ENSG00000100604
Chromogranin-A precursor
Tissue enriched
Detected in some
adrenal gland:
301.0
CIB4
ENSSSCG00000008564
ENSG00000157884
Calcium and integrin binding family member 4
Tissue enhanced
Detected in many
testis:
34.9
CILP2
ENSSSCG00000013934
ENSG00000160161
Cartilage intermediate layer protein 2
Tissue enriched
Detected in some
cartilage:
152.8
CKMT2
ENSSSCG00000014128
ENSG00000131730
Creatine kinase S-type, mitochondrial
Group enriched
Detected in many
heart:
107.9
skeletal muscle:
228.0
CLDN15
ENSSSCG00000038901
ENSG00000106404
Claudin-15
Group enriched
Detected in many
adipose tissue:
17.5
mesothelial tissue:
34.7
small intestine:
57.1
CLDN7
ENSSSCG00000017934
ENSG00000181885
Claudin-7 precursor
Tissue enhanced
Detected in many
large intestine:
56.5
male glands:
40.9
CLEC2L
ENSSSCG00000038147
ENSG00000236279
C-type lectin domain family 2 member L
Group enriched
Detected in some
brain:
30.5
choroid plexus:
8.1
heart:
26.3
retina:
8.6
CMTM5
ENSSSCG00000002028
ENSG00000166091
CKLF-like MARVEL transmembrane domain-containing protein 5
Tissue enhanced
Detected in some
brain:
61.9
heart:
13.2
vagus nerve:
29.0
CNTFR
ENSSSCG00000010974
ENSG00000122756
Ciliary neurotrophic factor receptor
Tissue enhanced
Detected in many
urinary bladder:
60.4
CNTNAP2
ENSSSCG00000037981
ENSG00000174469
Contactin associated protein like 2
Tissue enhanced
Detected in many
brain:
24.4
cervix:
19.4
pituitary gland:
25.1
thyroid gland:
18.3
COL11A1
ENSSSCG00000006857
ENSG00000060718
Collagen type XI alpha 1 chain
Tissue enriched
Detected in many
cartilage:
170.9
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