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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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1362 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TNMD
ENSSSCG00000012480
ENSG00000000005
Tenomodulin
Group enriched
Detected in some
brain:
27.8
choroid plexus:
33.0
dura mater:
43.7
TOX3
ENSSSCG00000002835
ENSG00000103460
TOX high mobility group box family member 3
Tissue enhanced
Detected in many
lens:
84.4
TRAF3IP3
ENSSSCG00000032721
ENSG00000009790
TRAF3 interacting protein 3
Tissue enhanced
Detected in all
lymphoid tissue:
58.4
TRIL
ENSSSCG00000016689
ENSG00000255690
TLR4 interactor with leucine rich repeats
Low tissue specificity
Detected in many
TRPC6
ENSSSCG00000024022
ENSG00000137672
Transient receptor potential cation channel subfamily C member 6
Low tissue specificity
Detected in many
TRPS1
ENSSSCG00000006018
ENSG00000104447
Transcriptional repressor GATA binding 1
Tissue enhanced
Detected in all
cartilage:
75.0
male glands:
80.1
TRUB1
ENSSSCG00000010653
ENSG00000165832
TruB pseudouridine synthase family member 1
Low tissue specificity
Detected in all
TSPAN15
ENSSSCG00000036152
ENSG00000099282
Tetraspanin 15
Tissue enhanced
Detected in many
lens:
89.8
TSPAN18
ENSSSCG00000013278
ENSG00000157570
Tetraspanin 18
Tissue enhanced
Detected in many
smooth muscle:
43.6
TSPAN31
ENSSSCG00000036731
ENSG00000135452
Tetraspanin 31
Tissue enhanced
Detected in all
male glands:
63.9
TSPAN9
ENSSSCG00000000735
ENSG00000011105
Tetraspanin-9
Low tissue specificity
Detected in all
TSPYL1
ENSSSCG00000004438
ENSG00000189241
TSPY like 1
Low tissue specificity
Detected in all
TSPYL4
ENSSSCG00000004439
ENSG00000187189
TSPY like 4
Tissue enhanced
Detected in many
brain:
81.1
pineal gland:
45.2
retina:
25.6
TTC39C
ENSSSCG00000003710
ENSG00000168234
Tetratricopeptide repeat domain 39C
Tissue enhanced
Detected in all
liver:
43.1
TTC9
ENSSSCG00000020701
ENSG00000133985
Tetratricopeptide repeat domain 9
Tissue enhanced
Detected in many
brain:
22.7
choroid plexus:
54.1
TUBA4A
ENSSSCG00000016216
ENSG00000127824
Tubulin alpha 4a
Tissue enhanced
Detected in many
brain:
63.2
skeletal muscle:
71.1
TUBB2B
ENSSSCG00000033655
ENSG00000137285
Tubulin beta-2B chain
Tissue enhanced
Detected in many
brain:
54.1
lens:
23.5
TUFT1
ENSSSCG00000006620
ENSG00000143367
Tuftelin 1
Tissue enhanced
Detected in many
cornea:
46.7
TUSC3
ENSSSCG00000021988
ENSG00000104723
Tumor suppressor candidate 3
Tissue enhanced
Detected in many
epididymis:
41.1
pineal gland:
61.3
pituitary gland:
43.7
TWIST2
ENSSSCG00000016343
ENSG00000233608
Twist family bHLH transcription factor 2
Tissue enhanced
Detected in many
skin:
55.5
TWSG1
ENSSSCG00000039663
ENSG00000128791
Twisted gastrulation BMP signaling modulator 1
Low tissue specificity
Detected in all
UBE2O
ENSSSCG00000029901
ENSG00000175931
Ubiquitin conjugating enzyme E2 O
Low tissue specificity
Detected in all
UCP2
ENSSSCG00000014833
ENSG00000175567
Mitochondrial uncoupling protein 2
Tissue enhanced
Detected in many
lens:
49.1
lung:
55.0
lymphoid tissue:
69.1
upper respiratory system:
61.4
UNC13B
ENSSSCG00000005305
ENSG00000198722
Unc-13 homolog B
Low tissue specificity
Detected in all
UNC13C
ENSSSCG00000004614
ENSG00000137766
Unc-13 homolog C
Tissue enriched
Detected in many
brain:
98.8
USHBP1
ENSSSCG00000036575
ENSG00000130307
USH1 protein network component harmonin binding protein 1
Low tissue specificity
Detected in many
UTP6
ENSSSCG00000017745
ENSG00000108651
UTP6, small subunit processome component
Tissue enhanced
Detected in all
cartilage:
59.4
VASH2
ENSSSCG00000015589
ENSG00000143494
Vasohibin 2
Tissue enhanced
Detected in many
testis:
40.0
VEGFA
ENSSSCG00000001695
ENSG00000112715
Vascular endothelial growth factor A precursor
Tissue enhanced
Detected in all
thyroid gland:
94.9
VEGFC
ENSSSCG00000015770
ENSG00000150630
Vascular endothelial growth factor C
Tissue enhanced
Detected in many
thyroid gland:
33.4
VGLL3
ENSSSCG00000032398
ENSG00000206538
Transcription cofactor vestigial-like protein 3
Tissue enhanced
Detected in many
mesothelial tissue:
30.9
vagus nerve:
39.6
VIPR2
ENSSSCG00000016403
ENSG00000106018
Vasoactive intestinal polypeptide receptor 2 precursor
Tissue enhanced
Detected in many
mesothelial tissue:
50.2
VIT
ENSSSCG00000008501
ENSG00000205221
Vitrin
Group enriched
Detected in many
cartilage:
112.4
lens:
52.1
VSIG2
ENSSSCG00000015199
ENSG00000019102
V-set and immunoglobulin domain containing 2
Tissue enhanced
Detected in many
stomach:
83.1
vagus nerve:
27.1
VWCE
ENSSSCG00000013093
ENSG00000167992
Von Willebrand factor C and EGF domains
Group enriched
Detected in all
cartilage:
51.0
liver:
41.2
VWF
ENSSSCG00000000712
ENSG00000110799
Von Willebrand factor precursor
Low tissue specificity
Detected in all
WDR86
ENSSSCG00000016437
ENSG00000187260
WD repeat domain 86
Low tissue specificity
Detected in many
WIF1
ENSSSCG00000030998
ENSG00000156076
Wnt inhibitory factor 1 precursor
Tissue enriched
Detected in some
cartilage:
317.7
WISP1
ENSSSCG00000005946
ENSG00000104415
WNT1 inducible signaling pathway protein 1
Tissue enhanced
Detected in many
cartilage:
33.9
WISP3
ENSSSCG00000004422
ENSG00000112761
WNT1 inducible signaling pathway protein 3
Group enriched
Detected in all
cartilage:
57.5
male glands:
22.0
WLS
ENSSSCG00000003795
ENSG00000116729
Wntless Wnt ligand secretion mediator
Tissue enhanced
Detected in many
choroid plexus:
66.6
lens:
73.9
pineal gland:
103.5
WNK4
ENSSSCG00000017387
ENSG00000126562
WNK lysine deficient protein kinase 4
Tissue enhanced
Detected in many
cartilage:
36.2
kidney:
46.7
penis:
29.3
vagus nerve:
36.8
WSCD1
ENSSSCG00000017894
ENSG00000179314
WSC domain containing 1
Tissue enhanced
Detected in many
brain:
41.5
pineal gland:
18.9
XG
ENSSSCG00000036036
ENSG00000124343
Xg blood group
Low tissue specificity
Detected in all
ZBP1
ENSSSCG00000007508
ENSG00000124256
Z-DNA-binding protein 1
Tissue enhanced
Detected in many
small intestine:
29.8
stomach:
33.2
ZBTB21
ENSSSCG00000027786
ENSG00000173276
Zinc finger and BTB domain containing 21
Low tissue specificity
Detected in all
ZBTB8A
ENSSSCG00000021457
ENSG00000160062
Zinc finger and BTB domain containing 8A
Low tissue specificity
Detected in all
ZCCHC24
ENSSSCG00000033074
ENSG00000165424
Zinc finger CCHC-type containing 24
Low tissue specificity
Detected in all
ZCCHC3
ENSSSCG00000007211
ENSG00000247315
Zinc finger CCHC-type containing 3
Low tissue specificity
Detected in all
ZDHHC14
ENSSSCG00000035027
ENSG00000175048
Zinc finger DHHC-type containing 14
Tissue enhanced
Detected in many
brain:
33.6
stomach:
22.1
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