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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SCARA5
ENSSSCG00000009672
ENSG00000168079
Scavenger receptor class A member 5
Tissue enhanced
Detected in many
dura mater:
48.8
SCARB2
ENSSSCG00000008980
ENSG00000138760
Lysosome membrane protein 2 precursor
Low tissue specificity
Detected in all
SCD
ENSSSCG00000010554
ENSG00000099194
Acyl-CoA desaturase
Tissue enhanced
Detected in many
adipose tissue:
174.7
aorta:
147.9
bone marrow:
192.1
SCG2
ENSSSCG00000023032
ENSG00000171951
Secretogranin-2 precursor
Group enriched
Detected in some
pineal gland:
170.0
pituitary gland:
272.9
SCG5
ENSSSCG00000004807
ENSG00000166922
Neuroendocrine protein 7B2 precursor
Tissue enhanced
Detected in many
brain:
32.2
pineal gland:
43.6
pituitary gland:
90.2
SCGN
ENSSSCG00000001101
ENSG00000079689
Secretagogin
Tissue enhanced
Detected in some
brain:
65.7
breast:
59.3
esophagus:
45.3
SCML2
ENSSSCG00000012155
ENSG00000102098
Scm polycomb group protein like 2
Tissue enhanced
Detected in all
testis:
26.0
SCN1A
ENSSSCG00000024204
ENSG00000144285
Sodium voltage-gated channel alpha subunit 1
Tissue enriched
Detected in some
brain:
46.9
SCN2A
ENSSSCG00000015905
ENSG00000136531
Sodium voltage-gated channel alpha subunit 2
Tissue enriched
Detected in some
brain:
44.5
SCN2B
ENSSSCG00000021651
ENSG00000149575
Sodium voltage-gated channel beta subunit 2
Tissue enriched
Detected in some
brain:
47.5
SCN3A
ENSSSCG00000015911
ENSG00000153253
Sodium voltage-gated channel alpha subunit 3
Group enriched
Detected in some
brain:
19.6
pineal gland:
22.3
pituitary gland:
21.3
SCN3B
ENSSSCG00000024299
ENSG00000166257
Sodium voltage-gated channel beta subunit 3
Tissue enriched
Detected in some
brain:
78.9
SCN4B
ENSSSCG00000029199
ENSG00000177098
Sodium voltage-gated channel beta subunit 4
Tissue enhanced
Detected in many
brain:
61.8
skeletal muscle:
37.7
SCN5A
ENSSSCG00000011259
ENSG00000183873
Sodium voltage-gated channel alpha subunit 5
Tissue enriched
Detected in some
heart:
45.8
SCN7A
ENSSSCG00000015914
ENSG00000136546
Sodium voltage-gated channel alpha subunit 7
Group enriched
Detected in many
ductus deferens:
24.9
vagus nerve:
56.7
SCN8A
ENSSSCG00000000228
ENSG00000196876
Sodium voltage-gated channel alpha subunit 8
Group enriched
Detected in many
brain:
34.5
lens:
11.0
pineal gland:
11.7
retina:
16.6
SCN9A
ENSSSCG00000015913
ENSG00000169432
Sodium voltage-gated channel alpha subunit 9
Tissue enhanced
Detected in many
brain:
19.2
pituitary gland:
17.5
SCNN1B
ENSSSCG00000028923
ENSG00000168447
Sodium channel epithelial 1 beta subunit
Tissue enhanced
Detected in many
kidney:
24.3
stomach:
38.0
SCRT1
ENSSSCG00000025879
ENSG00000261678
Scratch family transcriptional repressor 1
Group enriched
Detected in some
brain:
33.1
retina:
13.4
SCT
ENSSSCG00000040951
ENSG00000070031
Secretin
Group enriched
Detected in some
retina:
23.2
small intestine:
59.4
SCUBE1
ENSSSCG00000000029
ENSG00000159307
Signal peptide, CUB domain and EGF like domain containing 1
Tissue enhanced
Detected in many
cervix:
50.6
endometrium:
43.3
SDC2
ENSSSCG00000006088
ENSG00000169439
Syndecan-2 precursor
Tissue enhanced
Detected in all
cornea:
91.0
liver:
65.9
SDC3
ENSSSCG00000003592
ENSG00000162512
Syndecan 3
Tissue enhanced
Detected in all
brain:
64.9
cartilage:
42.7
SDCBP
ENSSSCG00000006237
ENSG00000137575
Syntenin-1 CG9291-PB
Low tissue specificity
Detected in all
SDCBP2
ENSSSCG00000007189
ENSG00000125775
Syntenin-2
Tissue enhanced
Detected in many
endometrium:
20.0
gallbladder:
34.5
large intestine:
20.9
SDK1
ENSSSCG00000007574
ENSG00000146555
Sidekick cell adhesion molecule 1
Tissue enhanced
Detected in many
lens:
57.1
SDK2
ENSSSCG00000017244
ENSG00000069188
Sidekick cell adhesion molecule 2
Tissue enhanced
Detected in many
cartilage:
46.4
SEC14L5
ENSSSCG00000007926
ENSG00000103184
SEC14 like lipid binding 5
Tissue enhanced
Detected in many
brain:
37.6
SEC16B
ENSSSCG00000039332
ENSG00000120341
SEC16 homolog B, endoplasmic reticulum export factor
Tissue enhanced
Detected in many
liver:
49.9
stomach:
26.0
SECISBP2L
ENSSSCG00000004653
ENSG00000138593
Selenocysteine insertion sequence-binding protein 2-like
Tissue enhanced
Detected in all
brain:
69.9
vagus nerve:
89.6
SEL1L3
ENSSSCG00000022446
ENSG00000091490
SEL1L family member 3
Tissue enhanced
Detected in many
brain:
46.9
esophagus:
60.4
SELENBP1
ENSSSCG00000006624
ENSG00000143416
Selenium binding protein 1
Tissue enhanced
Detected in all
large intestine:
122.7
skin:
83.9
SELENOM
ENSSSCG00000029781
ENSG00000198832
Selenoprotein M precursor
Tissue enhanced
Detected in many
ovary:
102.6
SELENOP
ENSSSCG00000021208
ENSG00000250722
Selenoprotein P precursor
Tissue enhanced
Detected in all
liver:
184.0
ovary:
174.6
SELP
ENSSSCG00000006288
ENSG00000174175
P-selectin precursor
Low tissue specificity
Detected in many
SEMA3B
ENSSSCG00000011400
ENSG00000012171
Semaphorin 3B
Tissue enhanced
Detected in many
vagus nerve:
112.4
SEMA3C
ENSSSCG00000023784
ENSG00000075223
Semaphorin 3C
Tissue enhanced
Detected in many
cartilage:
97.2
SEMA3D
ENSSSCG00000015396
ENSG00000153993
Semaphorin 3D
Group enriched
Detected in many
cartilage:
103.9
thyroid gland:
27.0
SEMA3E
ENSSSCG00000015399
ENSG00000170381
Semaphorin 3E
Tissue enhanced
Detected in many
choroid plexus:
35.4
SEMA3F
ENSSSCG00000011398
ENSG00000001617
Semaphorin 3F
Tissue enhanced
Detected in many
mesothelial tissue:
41.2
SEMA3G
ENSSSCG00000011440
ENSG00000010319
Semaphorin 3G
Low tissue specificity
Detected in many
SEMA4A
ENSSSCG00000006495
ENSG00000196189
Semaphorin 4A
Tissue enhanced
Detected in many
lymphoid tissue:
35.6
stomach:
34.4
SEMA4D
ENSSSCG00000009584
ENSG00000187764
Semaphorin 4D
Tissue enhanced
Detected in all
brain:
61.2
SEMA5A
ENSSSCG00000017095
ENSG00000112902
Semaphorin 5A
Tissue enhanced
Detected in many
lens:
89.0
SEMA6A
ENSSSCG00000014224
ENSG00000092421
Semaphorin 6A
Low tissue specificity
Detected in many
SEMA6B
ENSSSCG00000035176
ENSG00000167680
Semaphorin 6B
Low tissue specificity
Detected in all
SEMA6C
ENSSSCG00000006635
ENSG00000143434
Semaphorin 6C
Tissue enriched
Detected in many
skeletal muscle:
81.1
SEPT10
ENSSSCG00000023050
ENSG00000186522
Septin 10
Low tissue specificity
Detected in all
SEPT11
ENSSSCG00000008986
ENSG00000138758
Septin 11
Low tissue specificity
Detected in all
SEPT3
ENSSSCG00000000040
ENSG00000100167
Septin 3
Tissue enhanced
Detected in all
brain:
67.7
testis:
47.2
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