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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PQLC3
ENSSSCG00000008631
ENSG00000162976
PQ loop repeat containing 3
Low tissue specificity
Detected in all
PRCD
ENSSSCG00000028604
ENSG00000214140
Photoreceptor disc component
Tissue enriched
Detected in many
retina:
128.9
PRDM1
ENSSSCG00000004369
ENSG00000057657
PR/SET domain 1
Low tissue specificity
Detected in many
PRDM12
ENSSSCG00000005703
ENSG00000130711
PR/SET domain 12
Tissue enriched
Detected in single
brain:
13.3
PRDM16
ENSSSCG00000021490
ENSG00000142611
PR/SET domain 16
Tissue enhanced
Detected in many
lymphoid tissue:
33.7
PRDM6
ENSSSCG00000014238
ENSG00000061455
PR/SET domain 6
Tissue enhanced
Detected in many
cervix:
23.2
smooth muscle:
34.7
urinary bladder:
29.3
PRDX6
ENSSSCG00000022742
ENSG00000117592
Peroxiredoxin-6
Tissue enhanced
Detected in all
large intestine:
134.3
PRELID2
ENSSSCG00000014406
ENSG00000186314
PRELI domain containing 2
Low tissue specificity
Detected in all
PRELP
ENSSSCG00000015271
ENSG00000188783
Proline and arginine rich end leucine rich repeat protein
Tissue enriched
Detected in many
cartilage:
236.7
PREX2
ENSSSCG00000006199
ENSG00000046889
Phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2
Low tissue specificity
Detected in many
PRICKLE1
ENSSSCG00000034491
ENSG00000139174
Prickle planar cell polarity protein 1
Tissue enhanced
Detected in all
lens:
43.2
PRICKLE2
ENSSSCG00000011495
ENSG00000163637
Prickle planar cell polarity protein 2
Tissue enhanced
Detected in many
brain:
33.8
PRIMA1
ENSSSCG00000002464
ENSG00000175785
Proline rich membrane anchor 1
Tissue enhanced
Detected in many
brain:
34.8
mesothelial tissue:
28.9
PRKAA2
ENSSSCG00000036145
ENSG00000162409
5'-AMP-activated protein kinase catalytic subunit alpha-2
Tissue enhanced
Detected in many
heart:
38.4
skeletal muscle:
54.3
PRKAR1B
ENSSSCG00000007542
ENSG00000188191
Protein kinase cAMP-dependent type I regulatory subunit beta
Tissue enriched
Detected in many
brain:
37.7
PRKAR2B
ENSSSCG00000037706
ENSG00000005249
Protein kinase cAMP-dependent type II regulatory subunit beta
Tissue enhanced
Detected in many
adipose tissue:
55.9
PRKCA
ENSSSCG00000017268
ENSG00000154229
Protein kinase C alpha
Tissue enhanced
Detected in all
brain:
40.2
vagus nerve:
44.0
PRKCD
ENSSSCG00000023503
ENSG00000163932
Protein kinase C delta
Tissue enhanced
Detected in all
stomach:
54.1
PRKCE
ENSSSCG00000008444
ENSG00000171132
Protein kinase C epsilon
Tissue enhanced
Detected in many
brain:
44.3
PRKCG
ENSSSCG00000003256
ENSG00000126583
Protein kinase C gamma
Tissue enriched
Detected in some
brain:
56.1
PRKCQ
ENSSSCG00000011131
ENSG00000065675
Protein kinase C theta
Tissue enhanced
Detected in all
choroid plexus:
30.7
lymphoid tissue:
36.3
skeletal muscle:
40.3
testis:
32.0
PRKD2
ENSSSCG00000026152
ENSG00000105287
Protein kinase D2
Low tissue specificity
Detected in all
PRKG1
ENSSSCG00000010429
ENSG00000185532
CGMP-dependent protein kinase 1
Tissue enhanced
Detected in all
smooth muscle:
48.6
PRL
ENSSSCG00000039721
ENSG00000172179
Prolactin precursor
Tissue enriched
Detected in some
pituitary gland:
654.6
PRLH
ENSSSCG00000036981
ENSG00000071677
Prolactin releasing hormone
Group enriched
Detected in some
brain:
12.0
liver:
8.2
PRLR
ENSSSCG00000016830
ENSG00000113494
Prolactin receptor precursor
Tissue enhanced
Detected in many
adrenal gland:
51.2
choroid plexus:
87.3
PROK2
ENSSSCG00000026200
ENSG00000163421
Prokineticin 2
Tissue enhanced
Detected in some
brain:
6.9
heart:
11.5
testis:
35.8
PROKR1
ENSSSCG00000038148
ENSG00000169618
Prokineticin receptor 1
Tissue enriched
Detected in some
epididymis:
37.2
PROKR2
ENSSSCG00000037063
ENSG00000101292
Prokineticin receptor 2
Low tissue specificity
Detected in all
PROS1
ENSSSCG00000025463
ENSG00000184500
Protein S
Tissue enhanced
Detected in all
choroid plexus:
61.8
liver:
44.4
PROSER2
ENSSSCG00000022247
ENSG00000148426
Proline and serine rich 2
Low tissue specificity
Detected in many
PRPH
ENSSSCG00000000195
ENSG00000135406
Peripherin
Tissue enriched
Detected in many
brain:
87.3
PRPH2
ENSSSCG00000031628
ENSG00000112619
Peripherin 2
Tissue enriched
Detected in some
retina:
201.7
PRR15
ENSSSCG00000016686
ENSG00000176532
Proline rich 15
Tissue enriched
Detected in many
male glands:
87.3
PRR15L
ENSSSCG00000024743
ENSG00000167183
Proline rich 15 like
Tissue enhanced
Detected in many
large intestine:
88.9
male glands:
109.6
PRR18
ENSSSCG00000004021
ENSG00000176381
Proline rich 18
Tissue enhanced
Detected in many
brain:
27.6
epididymis:
10.2
PRR36
ENSSSCG00000013584
ENSG00000183248
Proline rich 36
Tissue enhanced
Detected in many
brain:
20.9
fallopian tube:
18.8
PRR5
ENSSSCG00000021748
ENSG00000186654
Proline-rich protein 5
Tissue enriched
Detected in many
lens:
105.4
PRR5L
ENSSSCG00000013292
ENSG00000135362
Proline rich 5 like
Tissue enhanced
Detected in many
adipose tissue:
32.8
brain:
35.0
PRR7
ENSSSCG00000040698
ENSG00000131188
Proline rich 7, synaptic
Tissue enriched
Detected in many
lens:
53.2
PRRG1
ENSSSCG00000027777
ENSG00000130962
Proline rich and Gla domain 1
Tissue enhanced
Detected in all
brain:
47.4
vagus nerve:
33.3
PRRG2
ENSSSCG00000003161
ENSG00000126460
Proline rich and Gla domain 2
Tissue enhanced
Detected in many
male glands:
39.6
PRRG3
ENSSSCG00000026254
ENSG00000130032
Proline rich and Gla domain 3
Tissue enriched
Detected in many
vagus nerve:
62.4
PRRT3
ENSSSCG00000011561
ENSG00000163704
Proline rich transmembrane protein 3
Tissue enhanced
Detected in all
brain:
18.1
pituitary gland:
16.0
PRSS12
ENSSSCG00000009114
ENSG00000164099
Serine protease 12
Tissue enhanced
Detected in all
choroid plexus:
55.3
PRSS21
ENSSSCG00000022744
ENSG00000007038
Serine protease 21
Tissue enhanced
Detected in some
brain:
10.2
lymphoid tissue:
6.4
testis:
27.5
PRSS33
ENSSSCG00000030518
ENSG00000103355
Serine protease 33
Tissue enhanced
Detected in some
male glands:
20.5
salivary gland:
10.3
upper respiratory system:
20.2
PRSS56
ENSSSCG00000016286
ENSG00000237412
Serine protease 56
Tissue enriched
Detected in some
brain:
25.4
PRX
ENSSSCG00000038439
ENSG00000105227
Periaxin
Group enriched
Detected in many
lens:
104.5
vagus nerve:
161.0
PSAT1
ENSSSCG00000005287
ENSG00000135069
Phosphoserine aminotransferase 1
Tissue enhanced
Detected in many
brain:
65.4
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