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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PLXDC1
ENSSSCG00000017511
ENSG00000161381
Plexin domain containing 1
Tissue enhanced
Detected in many
cervix:
31.1
synovial tissue:
58.1
PLXDC2
ENSSSCG00000032444
ENSG00000120594
Plexin domain containing 2
Low tissue specificity
Detected in all
PLXNA1
ENSSSCG00000024001
ENSG00000114554
Plexin A1
Low tissue specificity
Detected in all
PLXNA4
ENSSSCG00000021562
ENSG00000221866
Plexin A4
Tissue enhanced
Detected in many
brain:
30.1
penis:
32.8
PLXNB1
ENSSSCG00000011346
ENSG00000164050
Plexin B1
Low tissue specificity
Detected in all
PLXNB3
ENSSSCG00000012780
ENSG00000198753
Plexin B3
Tissue enhanced
Detected in many
skin:
22.6
vagus nerve:
54.8
PLXNC1
ENSSSCG00000000907
ENSG00000136040
Plexin C1
Tissue enhanced
Detected in many
cervix:
35.6
lymphoid tissue:
45.6
PLXND1
ENSSSCG00000011592
ENSG00000004399
Plexin D1
Low tissue specificity
Detected in many
PMCH
ENSSSCG00000000858
ENSG00000183395
Pro-MCH precursor
Tissue enriched
Detected in some
brain:
53.1
PMEPA1
ENSSSCG00000034259
ENSG00000124225
Protein TMEPAI
Tissue enhanced
Detected in many
cartilage:
70.3
PMP2
ENSSSCG00000036441
ENSG00000147588
Myelin P2 protein
Tissue enriched
Detected in some
brain:
159.9
PMP22
ENSSSCG00000037832
ENSG00000109099
Peripheral myelin protein 22
Tissue enhanced
Detected in many
brain:
106.6
vagus nerve:
291.1
PNCK
ENSSSCG00000012773
ENSG00000130822
Calcium/calmodulin-dependent protein kinase type 1B
Tissue enhanced
Detected in many
brain:
33.5
smooth muscle:
25.4
PNMA2
ENSSSCG00000009659
ENSG00000240694
PNMA family member 2
Tissue enriched
Detected in some
brain:
23.7
PNP
ENSSSCG00000002135
ENSG00000198805
Purine nucleoside phosphorylase
Low tissue specificity
Detected in many
PODNL1
ENSSSCG00000013762
ENSG00000132000
Podocan like 1
Tissue enhanced
Detected in many
cartilage:
24.7
vagus nerve:
31.8
PODXL2
ENSSSCG00000021397
ENSG00000114631
Podocalyxin like 2
Tissue enhanced
Detected in many
brain:
24.9
pineal gland:
18.5
POMC
ENSSSCG00000021155
ENSG00000115138
Pro-opiomelanocortin precursor
Tissue enriched
Detected in some
pituitary gland:
930.7
POMGNT2
ENSSSCG00000011293
ENSG00000144647
Protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
Tissue enhanced
Detected in all
ovary:
36.1
POMT1
ENSSSCG00000005716
ENSG00000130714
Protein O-mannosyltransferase 1
Tissue enhanced
Detected in all
testis:
58.6
POSTN
ENSSSCG00000009361
ENSG00000133110
Periostin isoform 1 precursor
Tissue enhanced
Detected in many
dura mater:
121.6
gallbladder:
82.5
mesothelial tissue:
89.0
upper respiratory system:
88.5
POU2F2
ENSSSCG00000037132
ENSG00000028277
POU domain, class 2, transcription factor 2
Tissue enhanced
Detected in many
lymphoid tissue:
56.2
stomach:
25.0
upper respiratory system:
25.1
POU3F1
ENSSSCG00000003646
ENSG00000185668
POU class 3 homeobox 1
Tissue enhanced
Detected in some
skin:
10.9
vagus nerve:
36.6
POU3F3
ENSSSCG00000022096
ENSG00000198914
POU class 3 homeobox 3
Tissue enhanced
Detected in some
epididymis:
29.3
kidney:
28.5
male glands:
66.6
POU3F4
ENSSSCG00000012454
ENSG00000196767
POU class 3 homeobox 4
Tissue enriched
Detected in some
brain:
10.6
POU4F1
ENSSSCG00000025334
ENSG00000152192
POU class 4 homeobox 1
Tissue enhanced
Detected in some
brain:
11.8
gallbladder:
7.8
retina:
15.2
PPA1
ENSSSCG00000010261
ENSG00000180817
Pyrophosphatase (inorganic) 1
Tissue enhanced
Detected in many
brain:
55.9
pineal gland:
64.9
PPARGC1B
ENSSSCG00000014437
ENSG00000155846
PPARG coactivator 1 beta
Tissue enhanced
Detected in many
stomach:
41.6
PPEF1
ENSSSCG00000030274
ENSG00000086717
Protein phosphatase with EF-hand domain 1
Group enriched
Detected in many
brain:
37.4
testis:
15.5
PPFIA2
ENSSSCG00000000940
ENSG00000139220
PTPRF interacting protein alpha 2
Tissue enhanced
Detected in many
brain:
35.6
retina:
25.0
PPFIA3
ENSSSCG00000022324
ENSG00000177380
PTPRF interacting protein alpha 3
Tissue enhanced
Detected in all
brain:
23.8
PPFIA4
ENSSSCG00000015474
ENSG00000143847
PTPRF interacting protein alpha 4
Group enriched
Detected in many
brain:
41.9
heart:
19.8
PPFIBP1
ENSSSCG00000000549
ENSG00000110841
PPFIA binding protein 1
Low tissue specificity
Detected in all
PPIL6
ENSSSCG00000004413
ENSG00000185250
Peptidyl-prolyl cis-trans isomerase-like 6
Tissue enhanced
Detected in some
choroid plexus:
34.3
fallopian tube:
41.8
testis:
27.2
upper respiratory system:
17.8
PPIP5K1
ENSSSCG00000004704
ENSG00000168781
Diphosphoinositol pentakisphosphate kinase 1
Tissue enhanced
Detected in all
retina:
44.8
PPIP5K2
ENSSSCG00000024999
ENSG00000145725
Diphosphoinositol pentakisphosphate kinase 2
Tissue enhanced
Detected in all
lens:
64.2
PPM1L
ENSSSCG00000023434
ENSG00000163590
Protein phosphatase, Mg2+/Mn2+ dependent 1L
Tissue enhanced
Detected in many
skeletal muscle:
36.8
PPP1R14A
ENSSSCG00000038077
ENSG00000167641
Protein phosphatase 1 regulatory subunit 14A
Tissue enhanced
Detected in all
brain:
87.2
smooth muscle:
60.9
PPP1R14C
ENSSSCG00000004094
ENSG00000198729
Protein phosphatase 1 regulatory inhibitor subunit 14C
Tissue enhanced
Detected in many
cornea:
21.4
heart:
30.0
skeletal muscle:
31.0
PPP1R15A
ENSSSCG00000003155
ENSG00000087074
Protein phosphatase 1 regulatory subunit 15A
Low tissue specificity
Detected in all
PPP1R16B
ENSSSCG00000007350
ENSG00000101445
Protein phosphatase 1 regulatory subunit 16B
Tissue enhanced
Detected in many
brain:
54.6
PPP1R17
ENSSSCG00000033535
ENSG00000106341
Protein phosphatase 1 regulatory subunit 17
Tissue enhanced
Detected in many
adrenal gland:
43.6
brain:
71.3
pineal gland:
69.3
salivary gland:
30.4
PPP1R1A
ENSSSCG00000000298
ENSG00000135447
Protein phosphatase 1 regulatory inhibitor subunit 1A
Tissue enriched
Detected in many
skeletal muscle:
231.9
PPP1R1B
ENSSSCG00000017498
ENSG00000131771
Protein phosphatase 1 regulatory inhibitor subunit 1B
Tissue enhanced
Detected in many
brain:
198.3
choroid plexus:
83.9
male glands:
76.8
PPP1R1C
ENSSSCG00000036674
ENSG00000150722
Protein phosphatase 1 regulatory inhibitor subunit 1C
Tissue enhanced
Detected in some
brain:
12.5
vagus nerve:
12.2
PPP1R32
ENSSSCG00000013081
ENSG00000162148
Protein phosphatase 1 regulatory subunit 32
Group enriched
Detected in some
testis:
85.6
upper respiratory system:
26.3
PPP1R36
ENSSSCG00000002275
ENSG00000165807
Protein phosphatase 1 regulatory subunit 36
Tissue enhanced
Detected in many
choroid plexus:
38.3
testis:
44.9
PPP1R7
ENSSSCG00000016376
ENSG00000115685
Protein phosphatase 1 regulatory subunit 7
Tissue enhanced
Detected in all
brain:
28.2
PPP2R2B
ENSSSCG00000028976
ENSG00000156475
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
Tissue enhanced
Detected in many
brain:
38.4
cornea:
32.3
lens:
62.1
retina:
33.4
PPP4R4
ENSSSCG00000002474
ENSG00000119698
Protein phosphatase 4 regulatory subunit 4
Tissue enhanced
Detected in many
brain:
32.8
epididymis:
41.9
testis:
29.0
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