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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PEA15
ENSSSCG00000032164
ENSG00000162734
Proliferation and apoptosis adaptor protein 15
Tissue enriched
Detected in all
lens:
683.5
PEAK3
ENSSSCG00000013461
ENSG00000188305
PEAK family member 3
Tissue enhanced
Detected in many
brain:
13.4
PEG10
ENSSSCG00000036049
ENSG00000242265
Sus scrofa paternally expressed 10 (PEG10), transcript variant 2, mRNA.
Group enriched
Detected in many
brain:
98.3
pituitary gland:
71.1
PELI2
ENSSSCG00000033800
ENSG00000139946
Pellino E3 ubiquitin protein ligase family member 2
Low tissue specificity
Detected in all
PELI3
ENSSSCG00000012944
ENSG00000174516
Pellino E3 ubiquitin protein ligase family member 3
Tissue enriched
Detected in all
lens:
45.5
PENK
ENSSSCG00000006243
ENSG00000181195
Proenkephalin
Tissue enhanced
Detected in many
adrenal gland:
92.5
brain:
162.9
PERP
ENSSSCG00000038420
ENSG00000112378
P53 apoptosis effector related to PMP-22
Tissue enhanced
Detected in many
cornea:
115.4
mouth:
93.3
skin:
53.2
PEX11G
ENSSSCG00000013569
ENSG00000104883
Peroxisomal biogenesis factor 11 gamma
Low tissue specificity
Detected in all
PEX5L
ENSSSCG00000011766
ENSG00000114757
Peroxisomal biogenesis factor 5 like
Tissue enhanced
Detected in many
brain:
43.0
retina:
16.2
vagus nerve:
21.3
PFKM
ENSSSCG00000021129
ENSG00000152556
ATP-dependent 6-phosphofructokinase, muscle type
Tissue enhanced
Detected in many
heart:
66.0
skeletal muscle:
163.3
PFKP
ENSSSCG00000011158
ENSG00000067057
Phosphofructokinase, platelet
Low tissue specificity
Detected in many
PGAM2
ENSSSCG00000016720
ENSG00000164708
Phosphoglycerate mutase 2
Tissue enriched
Detected in some
skeletal muscle:
191.4
PGBD5
ENSSSCG00000021027
ENSG00000177614
PiggyBac transposable element derived 5
Tissue enhanced
Detected in many
brain:
31.3
lymphoid tissue:
21.7
PGF
ENSSSCG00000002376
ENSG00000119630
Placental growth factor
Tissue enhanced
Detected in many
male glands:
50.9
PGM2L1
ENSSSCG00000014838
ENSG00000165434
Phosphoglucomutase 2 like 1
Low tissue specificity
Detected in all
PGM5
ENSSSCG00000005243
ENSG00000154330
Phosphoglucomutase 5
Tissue enhanced
Detected in many
ductus deferens:
87.8
smooth muscle:
116.8
urinary bladder:
103.9
PGR
ENSSSCG00000014977
ENSG00000082175
Progesterone receptor
Group enriched
Detected in some
cervix:
95.0
endometrium:
59.6
fallopian tube:
30.2
PHACTR1
ENSSSCG00000001052
ENSG00000112137
Phosphatase and actin regulator 1
Tissue enriched
Detected in many
brain:
66.8
PHF24
ENSSSCG00000005296
ENSG00000122733
PHD finger protein 24
Tissue enriched
Detected in some
brain:
39.7
PHGDH
ENSSSCG00000006717
ENSG00000092621
D-3-phosphoglycerate dehydrogenase
Tissue enhanced
Detected in many
brain:
44.1
endometrium:
80.4
PHLDA2
ENSSSCG00000021597
ENSG00000181649
Pleckstrin homology-like domain family A member 2
Tissue enhanced
Detected in many
urinary bladder:
47.4
PHLDA3
ENSSSCG00000029359
ENSG00000174307
Pleckstrin homology like domain family A member 3
Low tissue specificity
Detected in many
PHLDB1
ENSSSCG00000024578
ENSG00000019144
Pleckstrin homology like domain family B member 1
Tissue enhanced
Detected in all
cartilage:
87.1
PHLDB2
ENSSSCG00000022081
ENSG00000144824
Pleckstrin homology like domain family B member 2
Low tissue specificity
Detected in many
PHLPP1
ENSSSCG00000004896
ENSG00000081913
PH domain and leucine rich repeat protein phosphatase 1
Tissue enhanced
Detected in all
brain:
46.9
PHOSPHO2
ENSSSCG00000015936
ENSG00000144362
Pyridoxal phosphate phosphatase PHOSPHO2
Low tissue specificity
Detected in all
PI15
ENSSSCG00000006172
ENSG00000137558
Peptidase inhibitor 15
Tissue enhanced
Detected in many
cervix:
24.7
ductus deferens:
31.3
endometrium:
27.6
PI16
ENSSSCG00000001570
ENSG00000164530
Peptidase inhibitor 16 precursor
Group enriched
Detected in many
aorta:
78.7
mesothelial tissue:
207.1
PIANP
ENSSSCG00000000692
ENSG00000139200
PILR alpha associated neural protein
Tissue enriched
Detected in some
brain:
52.6
PICK1
ENSSSCG00000000114
ENSG00000100151
Protein interacting with PRKCA 1
Tissue enhanced
Detected in all
vagus nerve:
71.9
PID1
ENSSSCG00000035058
ENSG00000153823
PTB-containing, cubilin and LRP1-interacting protein
Tissue enhanced
Detected in all
cartilage:
70.1
choroid plexus:
63.6
PIEZO1
ENSSSCG00000035230
ENSG00000103335
Piezo type mechanosensitive ion channel component 1
Low tissue specificity
Detected in many
PIGZ
ENSSSCG00000029291
ENSG00000119227
Phosphatidylinositol glycan anchor biosynthesis class Z
Tissue enhanced
Detected in all
lymphoid tissue:
17.4
PIK3AP1
ENSSSCG00000010509
ENSG00000155629
Phosphoinositide 3-kinase adapter protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
49.3
PIK3C2B
ENSSSCG00000015283
ENSG00000133056
Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta
Low tissue specificity
Detected in all
PIK3CG
ENSSSCG00000027272
ENSG00000105851
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform
Tissue enhanced
Detected in many
lymphoid tissue:
27.6
PIK3R3
ENSSSCG00000003909
ENSG00000117461
Phosphoinositide-3-kinase regulatory subunit 3
Tissue enhanced
Detected in all
brain:
52.5
PIK3R5
ENSSSCG00000017991
ENSG00000141506
Phosphoinositide 3-kinase regulatory subunit 5
Tissue enhanced
Detected in many
lymphoid tissue:
43.2
stomach:
27.3
PIM2
ENSSSCG00000028964
ENSG00000102096
Pim-2 proto-oncogene, serine/threonine kinase
Tissue enhanced
Detected in all
ovary:
31.1
PIP4K2A
ENSSSCG00000011079
ENSG00000150867
Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha
Tissue enhanced
Detected in all
brain:
67.9
lymphoid tissue:
35.5
PIP5K1C
ENSSSCG00000013490
ENSG00000186111
Phosphatidylinositol-4-phosphate 5-kinase type 1 gamma
Tissue enhanced
Detected in all
brain:
50.9
PITPNM1
ENSSSCG00000012903
ENSG00000110697
Phosphatidylinositol transfer protein membrane associated 1
Low tissue specificity
Detected in all
PITX2
ENSSSCG00000034708
ENSG00000164093
Pituitary homeobox 2
Tissue enhanced
Detected in many
cornea:
16.8
large intestine:
18.7
mouth:
13.0
pituitary gland:
35.4
urinary bladder:
12.4
PITX3
ENSSSCG00000010578
ENSG00000107859
Paired like homeodomain 3
Tissue enriched
Detected in some
lens:
102.7
PKDCC
ENSSSCG00000008468
ENSG00000162878
Protein kinase domain containing, cytoplasmic
Low tissue specificity
Detected in all
PKIA
ENSSSCG00000006163
ENSG00000171033
CAMP-dependent protein kinase inhibitor alpha
Tissue enhanced
Detected in many
brain:
40.7
heart:
51.8
pineal gland:
34.9
skeletal muscle:
41.3
PKIB
ENSSSCG00000004236
ENSG00000135549
CAMP-dependent protein kinase inhibitor beta
Tissue enhanced
Detected in many
brain:
30.0
cornea:
40.2
male glands:
32.0
stomach:
35.0
PLA1A
ENSSSCG00000011895
ENSG00000144837
Phospholipase A1 member A
Tissue enhanced
Detected in all
kidney:
56.9
PLA2G16
ENSSSCG00000026914
ENSG00000176485
HRAS-like suppressor 3
Tissue enhanced
Detected in all
lens:
127.2
PLA2G3
ENSSSCG00000010023
ENSG00000100078
Phospholipase A2 group III
Tissue enhanced
Detected in many
ovary:
26.8
skin:
27.0
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