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Gene name
Human disease related genes
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UMAP gene cluster
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Subclass
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MS4A2
ENSSSCG00000034506
ENSG00000149534
High affinity immunoglobulin epsilon receptor subunit beta
Tissue enhanced
Detected in many
adipose tissue:
28.2
MSANTD3-TMEFF1
ENSSSCG00000005391
ENSG00000251349
MSANTD3-TMEFF1 readthrough
Tissue enhanced
Detected in many
brain:
44.5
MSMO1
ENSSSCG00000008857
ENSG00000052802
Methylsterol monooxygenase 1
Tissue enhanced
Detected in all
brain:
67.2
liver:
52.2
ovary:
61.3
MSN
ENSSSCG00000012365
ENSG00000147065
Moesin
Low tissue specificity
Detected in all
MSRA
ENSSSCG00000009684
ENSG00000175806
Methionine sulfoxide reductase A
Tissue enhanced
Detected in all
brain:
47.4
kidney:
39.7
liver:
46.1
MSX1
ENSSSCG00000008727
ENSG00000163132
Homeobox protein MSX-1
Tissue enhanced
Detected in many
choroid plexus:
36.0
endometrium:
42.5
penis:
30.6
MT3
ENSSSCG00000024305
ENSG00000087250
Metallothionein-3
Tissue enhanced
Detected in many
brain:
123.6
pineal gland:
25.4
pituitary gland:
40.4
MTAP
ENSSSCG00000005135
ENSG00000099810
Methylthioadenosine phosphorylase
Low tissue specificity
Detected in all
MTCL1
ENSSSCG00000003684
ENSG00000168502
Microtubule crosslinking factor 1
Low tissue specificity
Detected in all
MTFR1
ENSSSCG00000006219
ENSG00000066855
Mitochondrial fission regulator 1
Tissue enhanced
Detected in all
testis:
48.2
MTHFD2
ENSSSCG00000008289
ENSG00000065911
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
Tissue enhanced
Detected in all
male glands:
39.3
ovary:
29.7
MTMR1
ENSSSCG00000012743
ENSG00000063601
Myotubularin related protein 1
Low tissue specificity
Detected in all
MTMR10
ENSSSCG00000004844
ENSG00000166912
Myotubularin related protein 10
Low tissue specificity
Detected in all
MTUS2
ENSSSCG00000025996
ENSG00000132938
Microtubule associated scaffold protein 2
Tissue enhanced
Detected in many
cornea:
18.9
heart:
34.6
smooth muscle:
32.0
MUC15
ENSSSCG00000013340
ENSG00000169550
Mucin 15, cell surface associated
Tissue enriched
Detected in some
epididymis:
114.0
MUC6
ENSSSCG00000012835
ENSG00000184956
Mucin 6, oligomeric mucus/gel-forming
Tissue enriched
Detected in some
small intestine:
996.3
MUM1L1
ENSSSCG00000012548
ENSG00000157502
MUM1 like 1
Tissue enhanced
Detected in all
epididymis:
57.4
MVD
ENSSSCG00000034905
ENSG00000167508
Mevalonate diphosphate decarboxylase
Low tissue specificity
Detected in all
MVK
ENSSSCG00000009931
ENSG00000110921
Mevalonate kinase
Tissue enriched
Detected in many
liver:
84.3
MX1
ENSSSCG00000012077
ENSG00000157601
Interferon-induced GTP-binding protein Mx1
Low tissue specificity
Detected in all
MXRA7
ENSSSCG00000037376
ENSG00000182534
Matrix remodeling associated 7
Low tissue specificity
Detected in all
MXRA8
ENSSSCG00000021880
ENSG00000162576
Matrix remodeling associated 8
Low tissue specificity
Detected in all
MYBL2
ENSSSCG00000007366
ENSG00000101057
Myb-related protein B
Tissue enhanced
Detected in many
lymphoid tissue:
50.3
stomach:
31.0
upper respiratory system:
36.3
MYBPC1
ENSSSCG00000000866
ENSG00000196091
Myosin binding protein C, slow type
Tissue enriched
Detected in some
skeletal muscle:
331.7
MYBPC3
ENSSSCG00000013236
ENSG00000134571
Myosin binding protein C, cardiac
Tissue enriched
Detected in some
heart:
207.4
MYC
ENSSSCG00000005965
ENSG00000136997
Myc proto-oncogene protein
Tissue enhanced
Detected in many
mesothelial tissue:
87.7
MYCBPAP
ENSSSCG00000017563
ENSG00000136449
MYCBP associated protein
Tissue enriched
Detected in many
testis:
56.2
MYCL
ENSSSCG00000039761
ENSG00000116990
MYCL proto-oncogene, bHLH transcription factor
Tissue enhanced
Detected in many
stomach:
21.9
upper respiratory system:
27.0
urinary bladder:
33.8
MYD88
ENSSSCG00000011251
ENSG00000172936
Myeloid differentiation primary response protein MyD88
Low tissue specificity
Detected in many
MYH11
ENSSSCG00000000146
ENSG00000133392
Myosin heavy chain 11
Tissue enhanced
Detected in many
ductus deferens:
178.9
smooth muscle:
565.6
urinary bladder:
187.5
MYH7
ENSSSCG00000002029
ENSG00000197616
Myosin-7
Group enriched
Detected in some
heart:
575.2
skeletal muscle:
287.0
MYH9
ENSSSCG00000000145
ENSG00000100345
Myosin heavy chain 9
Low tissue specificity
Detected in all
MYL3
ENSSSCG00000011325
ENSG00000160808
Myosin light chain 3
Group enriched
Detected in some
heart:
596.1
skeletal muscle:
418.9
MYL9
ENSSSCG00000036402
ENSG00000101335
Myosin regulatory light polypeptide 9
Tissue enhanced
Detected in many
smooth muscle:
241.8
urinary bladder:
100.0
MYLK
ENSSSCG00000011867
ENSG00000065534
Myosin light chain kinase
Tissue enhanced
Detected in many
ductus deferens:
164.5
endometrium:
133.8
smooth muscle:
313.8
MYLK3
ENSSSCG00000036874
ENSG00000140795
Myosin light chain kinase 3
Tissue enriched
Detected in some
heart:
59.0
MYO16
ENSSSCG00000009543
ENSG00000041515
Myosin XVI
Tissue enhanced
Detected in some
brain:
36.7
lens:
16.1
liver:
11.6
pineal gland:
12.5
retina:
11.4
MYO1B
ENSSSCG00000016061
ENSG00000128641
Myosin IB
Tissue enhanced
Detected in all
lens:
79.8
male glands:
71.5
MYO1C
ENSSSCG00000021821
ENSG00000197879
Myosin IC
Low tissue specificity
Detected in many
MYO1D
ENSSSCG00000017728
ENSG00000176658
Myosin ID
Tissue enhanced
Detected in many
cartilage:
55.8
MYO1E
ENSSSCG00000004587
ENSG00000157483
Myosin IE
Low tissue specificity
Detected in all
MYO5B
ENSSSCG00000004511
ENSG00000167306
Myosin VB
Tissue enhanced
Detected in many
lens:
59.4
MYO9B
ENSSSCG00000013876
ENSG00000099331
Myosin IXB
Low tissue specificity
Detected in all
MYRF
ENSSSCG00000013078
ENSG00000124920
Myelin regulatory factor
Group enriched
Detected in many
adipose tissue:
28.3
brain:
62.5
gallbladder:
23.3
mesothelial tissue:
37.1
stomach:
55.6
MYRIP
ENSSSCG00000011269
ENSG00000170011
Rab effector MyRIP
Tissue enhanced
Detected in many
male glands:
35.2
MYT1
ENSSSCG00000039212
ENSG00000196132
Myelin transcription factor 1
Tissue enhanced
Detected in some
brain:
27.3
pituitary gland:
8.0
retina:
15.7
MYT1L
ENSSSCG00000029334
ENSG00000186487
Myelin transcription factor 1 like
Group enriched
Detected in some
brain:
17.3
retina:
4.5
na
ENSSSCG00000000028
Tissue enhanced
Detected in many
lens:
18.8
testis:
45.5
na
ENSSSCG00000000245
ENSG00000170465,ENSG00000205420
Group enriched
Detected in some
mouth:
222.9
skin:
58.5
na
ENSSSCG00000000657
Tissue enhanced
Detected in many
large intestine:
62.2
lymphoid tissue:
54.2
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