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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
15
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MFRP
ENSSSCG00000015119
ENSG00000235718
Membrane frizzled-related protein
Tissue enriched
Detected in some
choroid plexus:
190.0
MGARP
ENSSSCG00000009062
ENSG00000137463
Protein MGARP
Group enriched
Detected in some
cornea:
99.5
lens:
163.1
MGAT4C
ENSSSCG00000032321
ENSG00000182050
Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C
Tissue enriched
Detected in some
epididymis:
102.3
MGAT5B
ENSSSCG00000017170
ENSG00000167889
Mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B
Tissue enriched
Detected in some
brain:
29.0
MGMT
ENSSSCG00000010756
ENSG00000170430
O-6-methylguanine-DNA methyltransferase
Low tissue specificity
Detected in all
MGP
ENSSSCG00000037697
ENSG00000111341
Matrix Gla protein
Tissue enhanced
Detected in many
aorta:
118.7
dura mater:
144.7
mesothelial tissue:
126.3
MICAL1
ENSSSCG00000004412
ENSG00000135596
Microtubule associated monooxygenase, calponin and LIM domain containing 1
Tissue enhanced
Detected in all
lymphoid tissue:
48.5
MICALL1
ENSSSCG00000000118
ENSG00000100139
MICAL like 1
Low tissue specificity
Detected in all
MICALL2
ENSSSCG00000007557
ENSG00000164877
MICAL like 2
Tissue enhanced
Detected in many
stomach:
32.3
MID1IP1
ENSSSCG00000025447
ENSG00000165175
Mid1-interacting protein 1
Tissue enhanced
Detected in all
brain:
64.1
MINDY1
ENSSSCG00000006642
ENSG00000143409
MINDY lysine 48 deubiquitinase 1
Low tissue specificity
Detected in all
MINDY4
ENSSSCG00000016674
ENSG00000106125
MINDY lysine 48 deubiquitinase 4
Low tissue specificity
Detected in all
MISP3
ENSSSCG00000013768
ENSG00000141854
Uncharacterized protein MISP3
Tissue enhanced
Detected in all
male glands:
55.7
MITF
ENSSSCG00000011514
ENSG00000187098
Sus scrofa microphthalmia-associated transcription factor-like (LOC102167244), mRNA.
Tissue enhanced
Detected in all
cervix:
72.5
MKX
ENSSSCG00000029783
ENSG00000150051
Mohawk homeobox
Tissue enhanced
Detected in many
cartilage:
33.3
penis:
37.4
MLF1
ENSSSCG00000037461
ENSG00000178053
Myeloid leukemia factor 1
Tissue enhanced
Detected in many
choroid plexus:
51.9
heart:
51.4
skeletal muscle:
80.9
testis:
86.7
MLLT11
ENSSSCG00000030278
ENSG00000213190
Protein AF1q
Group enriched
Detected in many
brain:
62.9
pineal gland:
53.3
retina:
20.3
MLXIPL
ENSSSCG00000007710
ENSG00000009950
MLX interacting protein like
Tissue enhanced
Detected in many
adipose tissue:
74.7
liver:
76.6
MME
ENSSSCG00000011723
ENSG00000196549
Membrane metalloendopeptidase
Tissue enhanced
Detected in many
choroid plexus:
43.9
endometrium:
40.3
kidney:
60.8
ovary:
39.6
MMP14
ENSSSCG00000002039
ENSG00000157227
Matrix metallopeptidase 14
Tissue enhanced
Detected in all
cervix:
107.7
ovary:
96.3
MMP15
ENSSSCG00000002806
ENSG00000102996
Matrix metallopeptidase 15
Tissue enhanced
Detected in all
stomach:
61.4
MMP19
ENSSSCG00000000368
ENSG00000123342
Matrix metallopeptidase 19
Tissue enhanced
Detected in many
liver:
39.5
ovary:
32.3
MMP2
ENSSSCG00000002829
ENSG00000087245
72 kDa type IV collagenase precursor
Tissue enhanced
Detected in all
cervix:
147.1
MMP24
ENSSSCG00000040160
ENSG00000125966
Matrix metallopeptidase 24
Tissue enhanced
Detected in all
adrenal gland:
36.5
brain:
39.8
MMP28
ENSSSCG00000034440
ENSG00000271447
Matrix metallopeptidase 28
Tissue enhanced
Detected in many
penis:
38.4
MN1
ENSSSCG00000009966
ENSG00000169184
MN1 proto-oncogene, transcriptional regulator
Tissue enhanced
Detected in many
cartilage:
60.6
skeletal muscle:
49.1
MNS1
ENSSSCG00000004601
ENSG00000138587
Meiosis specific nuclear structural 1
Tissue enhanced
Detected in many
choroid plexus:
18.3
fallopian tube:
20.6
testis:
20.3
MOB3C
ENSSSCG00000003897
ENSG00000142961
MOB kinase activator 3C
Low tissue specificity
Detected in many
MOG
ENSSSCG00000001248
ENSG00000204655
Myelin-oligodendrocyte glycoprotein precursor
Tissue enriched
Detected in some
brain:
170.0
MOK
ENSSSCG00000002531
ENSG00000080823
MOK protein kinase
Tissue enhanced
Detected in many
fallopian tube:
25.5
testis:
36.8
MORN1
ENSSSCG00000028706
ENSG00000116151
MORN repeat containing 1
Tissue enhanced
Detected in many
testis:
21.0
MOSPD2
ENSSSCG00000012131
ENSG00000130150
Motile sperm domain-containing protein 2
Tissue enhanced
Detected in all
lens:
33.6
MOV10
ENSSSCG00000006776
ENSG00000155363
Mov10 RISC complex RNA helicase
Low tissue specificity
Detected in many
MPL
ENSSSCG00000030906
ENSG00000117400
MPL proto-oncogene, thrombopoietin receptor
Tissue enhanced
Detected in many
testis:
23.8
MPP4
ENSSSCG00000026184
ENSG00000082126
Membrane palmitoylated protein 4
Tissue enriched
Detected in some
retina:
134.2
MPP6
ENSSSCG00000016717
ENSG00000105926
Membrane palmitoylated protein 6
Tissue enhanced
Detected in many
vagus nerve:
67.5
MPP7
ENSSSCG00000011070
ENSG00000150054
Membrane palmitoylated protein 7
Low tissue specificity
Detected in many
MPPE1
ENSSSCG00000028126
ENSG00000154889
Metallophosphoesterase 1
Tissue enriched
Detected in many
brain:
51.3
MPPED2
ENSSSCG00000013327
ENSG00000066382
Metallophosphoesterase domain containing 2
Tissue enhanced
Detected in many
kidney:
28.2
male glands:
33.9
MPZ
ENSSSCG00000006352
ENSG00000158887
Myelin protein zero
Tissue enriched
Detected in some
vagus nerve:
678.4
MPZL2
ENSSSCG00000015091
ENSG00000149573
Myelin protein zero-like protein 2 precursor
Tissue enhanced
Detected in many
cornea:
52.8
dura mater:
44.6
mouth:
39.8
MPZL3
ENSSSCG00000015090
ENSG00000160588
Myelin protein zero like 3
Low tissue specificity
Detected in many
MRAP2
ENSSSCG00000026943
ENSG00000135324
Melanocortin 2 receptor accessory protein 2
Tissue enhanced
Detected in many
cervix:
61.1
endometrium:
22.3
male glands:
25.1
MRAS
ENSSSCG00000027443
ENSG00000158186
Muscle RAS oncogene homolog
Tissue enhanced
Detected in many
brain:
51.1
MRC1
ENSSSCG00000011038
ENSG00000260314
Macrophage mannose receptor 1 precursor
Tissue enhanced
Detected in many
liver:
26.3
synovial tissue:
36.3
MRC2
ENSSSCG00000017300
ENSG00000011028
Mannose receptor C type 2
Tissue enhanced
Detected in many
cartilage:
91.8
MREG
ENSSSCG00000016175
ENSG00000118242
Melanoregulin
Tissue enhanced
Detected in many
brain:
23.1
cornea:
31.2
pineal gland:
20.2
MRO
ENSSSCG00000004521
ENSG00000134042
Protein maestro
Group enriched
Detected in some
ovary:
59.4
testis:
16.0
MRVI1
ENSSSCG00000020720
ENSG00000072952
Murine retrovirus integration site 1 homolog
Tissue enhanced
Detected in many
smooth muscle:
58.2
MS4A15
ENSSSCG00000034847
ENSG00000166961
Membrane spanning 4-domains A15
Tissue enriched
Detected in single
brain:
30.0
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