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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LUM
ENSSSCG00000000916
ENSG00000139329
Lumican precursor
Tissue enhanced
Detected in many
cornea:
60.7
dura mater:
57.2
synovial tissue:
57.4
LURAP1
ENSSSCG00000026991
ENSG00000171357
Leucine rich adaptor protein 1
Tissue enhanced
Detected in many
brain:
47.6
vagus nerve:
22.9
LURAP1L
ENSSSCG00000036360
ENSG00000153714
Leucine rich adaptor protein 1 like
Low tissue specificity
Detected in many
LUZP1
ENSSSCG00000003532
ENSG00000169641
Leucine zipper protein 1
Low tissue specificity
Detected in all
LXN
ENSSSCG00000020984
ENSG00000079257
Latexin
Low tissue specificity
Detected in all
LY6H
ENSSSCG00000033353
ENSG00000176956
Lymphocyte antigen 6 family member H
Tissue enriched
Detected in some
brain:
17.0
LY75
ENSSSCG00000021956
ENSG00000054219,ENSG00000248672
Lymphocyte antigen 75 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
56.9
LY86
ENSSSCG00000032355
ENSG00000112799
Lymphocyte antigen 86 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
46.7
LYL1
ENSSSCG00000024549
ENSG00000104903
LYL1, basic helix-loop-helix family member
Tissue enhanced
Detected in many
lymphoid tissue:
59.9
LYNX1
ENSSSCG00000031724
ENSG00000180155
Ly6/neurotoxin 1
Tissue enhanced
Detected in many
brain:
43.6
heart:
43.9
LYPD1
ENSSSCG00000035102
ENSG00000150551
Ly6/PLAUR domain-containing protein 1 precursor
Tissue enhanced
Detected in many
brain:
33.3
thyroid gland:
15.2
LYPD6
ENSSSCG00000023627
ENSG00000187123
LY6/PLAUR domain containing 6
Tissue enhanced
Detected in many
lens:
42.4
penis:
30.9
LYPD6B
ENSSSCG00000015677
ENSG00000150556
LY6/PLAUR domain containing 6B
Tissue enhanced
Detected in many
male glands:
19.8
pituitary gland:
30.7
skin:
18.5
LYSMD2
ENSSSCG00000004629
ENSG00000140280
LysM domain containing 2
Tissue enhanced
Detected in many
brain:
20.3
lens:
26.4
pineal gland:
13.6
LZTS2
ENSSSCG00000021798
ENSG00000107816
Leucine zipper tumor suppressor 2
Low tissue specificity
Detected in all
MAATS1
ENSSSCG00000011892
ENSG00000183833
MYCBP associated and testis expressed 1
Tissue enhanced
Detected in all
choroid plexus:
20.4
fallopian tube:
28.9
MAB21L1
ENSSSCG00000009351
ENSG00000180660
Mab-21 like 1
Tissue enhanced
Detected in many
lens:
45.0
retina:
44.9
MAB21L2
ENSSSCG00000009022
ENSG00000181541
Mab-21 like 2
Tissue enhanced
Detected in all
smooth muscle:
43.5
MAB21L3
ENSSSCG00000006742
ENSG00000173212
Mab-21 like 3
Tissue enhanced
Detected in all
liver:
32.8
MADD
ENSSSCG00000013235
ENSG00000110514
MAP kinase activating death domain
Low tissue specificity
Detected in all
MAF
ENSSSCG00000040607
ENSG00000178573
MAF bZIP transcription factor
Tissue enhanced
Detected in all
lens:
134.2
MAFB
ENSSSCG00000032251
ENSG00000204103
MAF bZIP transcription factor B
Tissue enhanced
Detected in many
lymphoid tissue:
125.0
synovial tissue:
119.6
MAFF
ENSSSCG00000030165
ENSG00000185022
MAF bZIP transcription factor F
Tissue enhanced
Detected in many
aorta:
49.2
cartilage:
42.5
mesothelial tissue:
59.5
MAG
ENSSSCG00000002887
ENSG00000105695
Myelin associated glycoprotein
Tissue enriched
Detected in some
brain:
138.2
MAGED1
ENSSSCG00000012318
ENSG00000179222
Melanoma-associated antigen D1
Low tissue specificity
Detected in all
MAGEE2
ENSSSCG00000032983
ENSG00000186675
MAGE family member E2
Group enriched
Detected in some
brain:
18.1
pineal gland:
12.6
MAGEL2
ENSSSCG00000004835
ENSG00000254585
MAGE family member L2
Tissue enhanced
Detected in many
brain:
19.3
pituitary gland:
9.7
MAGIX
ENSSSCG00000012295
ENSG00000269313
MAGI family member, X-linked
Low tissue specificity
Detected in all
MAGT1
ENSSSCG00000012435
ENSG00000102158
Magnesium transporter 1
Low tissue specificity
Detected in all
MAK
ENSSSCG00000001042
ENSG00000111837
Male germ cell associated kinase
Tissue enhanced
Detected in many
retina:
90.6
testis:
31.4
MAL2
ENSSSCG00000006003
ENSG00000147676
Protein MAL2
Tissue enhanced
Detected in many
brain:
38.7
MAMDC2
ENSSSCG00000030655
ENSG00000165072
MAM domain-containing protein 2
Tissue enhanced
Detected in many
smooth muscle:
34.5
MAN1A1
ENSSSCG00000004244
ENSG00000111885
Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA
Tissue enhanced
Detected in many
choroid plexus:
46.4
MAN1C1
ENSSSCG00000023235
ENSG00000117643
Mannosidase alpha class 1C member 1
Tissue enhanced
Detected in all
liver:
46.0
ovary:
66.6
MAN2A1
ENSSSCG00000014195
ENSG00000112893
Mannosidase alpha class 2A member 1
Low tissue specificity
Detected in all
MAOA
ENSSSCG00000012257
ENSG00000189221
Amine oxidase
Low tissue specificity
Detected in many
MAOB
ENSSSCG00000023215
ENSG00000069535
Amine oxidase
Tissue enhanced
Detected in many
liver:
102.0
ovary:
41.3
MAP2
ENSSSCG00000016151
ENSG00000078018
Microtubule associated protein 2
Tissue enhanced
Detected in many
brain:
87.1
pineal gland:
30.2
pituitary gland:
23.3
retina:
21.2
MAP2K7
ENSSSCG00000013588
ENSG00000076984
Mitogen-activated protein kinase kinase 7
Tissue enhanced
Detected in all
brain:
76.2
MAP3K1
ENSSSCG00000016918
ENSG00000095015
Mitogen-activated protein kinase kinase kinase 1
Low tissue specificity
Detected in all
MAP3K11
ENSSSCG00000037531
ENSG00000173327
Mitogen-activated protein kinase kinase kinase 11
Low tissue specificity
Detected in all
MAP3K19
ENSSSCG00000015696
ENSG00000176601
Mitogen-activated protein kinase kinase kinase 19
Tissue enhanced
Detected in some
brain:
13.9
choroid plexus:
18.8
fallopian tube:
29.7
upper respiratory system:
14.3
MAP3K5
ENSSSCG00000026041
ENSG00000197442
Mitogen-activated protein kinase kinase kinase 5
Low tissue specificity
Detected in all
MAP3K8
ENSSSCG00000020705
ENSG00000107968
Mitogen-activated protein kinase kinase kinase 8
Low tissue specificity
Detected in all
MAP4K4
ENSSSCG00000008164
ENSG00000071054
Mitogen-activated protein kinase kinase kinase kinase 4
Tissue enhanced
Detected in all
brain:
85.8
MAP6D1
ENSSSCG00000032328
ENSG00000180834
MAP6 domain containing 1
Tissue enriched
Detected in many
brain:
43.4
MAP7
ENSSSCG00000039049
ENSG00000135525
Microtubule associated protein 7
Tissue enhanced
Detected in many
pineal gland:
113.3
MAP7D2
ENSSSCG00000012161
ENSG00000184368
MAP7 domain containing 2
Tissue enhanced
Detected in many
brain:
22.4
skin:
16.8
MAPK10
ENSSSCG00000009228
ENSG00000109339
Mitogen-activated protein kinase 10
Tissue enhanced
Detected in many
brain:
50.3
MAPK11
ENSSSCG00000033171
ENSG00000185386
Mitogen-activated protein kinase 11
Tissue enhanced
Detected in many
brain:
13.1
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