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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LPL
ENSSSCG00000040631
ENSG00000175445
Lipoprotein lipase precursor
Tissue enhanced
Detected in many
adipose tissue:
134.0
aorta:
89.4
bone marrow:
101.4
LRBA
ENSSSCG00000009021
ENSG00000198589
LPS responsive beige-like anchor protein
Tissue enhanced
Detected in all
fallopian tube:
98.5
LRCH1
ENSSSCG00000009408
ENSG00000136141
Leucine rich repeats and calponin homology domain containing 1
Low tissue specificity
Detected in all
LRFN1
ENSSSCG00000032407
ENSG00000128011
Leucine rich repeat and fibronectin type III domain containing 1
Tissue enhanced
Detected in many
brain:
15.7
LRFN3
ENSSSCG00000002927
ENSG00000126243
Leucine rich repeat and fibronectin type III domain containing 3
Tissue enhanced
Detected in many
brain:
16.3
LRFN5
ENSSSCG00000004990
ENSG00000165379
Leucine rich repeat and fibronectin type III domain containing 5
Tissue enhanced
Detected in many
brain:
16.9
cervix:
11.5
LRGUK
ENSSSCG00000016542
ENSG00000155530
Leucine rich repeats and guanylate kinase domain containing
Tissue enhanced
Detected in many
brain:
16.3
fallopian tube:
35.2
upper respiratory system:
19.4
LRIG3
ENSSSCG00000000455
ENSG00000139263
Leucine rich repeats and immunoglobulin like domains 3
Low tissue specificity
Detected in many
LRP10
ENSSSCG00000034465
ENSG00000197324
Low-density lipoprotein receptor-related protein 10 precursor
Low tissue specificity
Detected in all
LRP8
ENSSSCG00000003848
ENSG00000157193
Low-density lipoprotein receptor-related protein 8 precursor
Tissue enhanced
Detected in many
brain:
30.5
ovary:
21.9
LRRC1
ENSSSCG00000001486
ENSG00000137269
Leucine rich repeat containing 1
Low tissue specificity
Detected in many
LRRC10B
ENSSSCG00000013088
ENSG00000204950
Leucine rich repeat containing 10B
Tissue enhanced
Detected in many
brain:
23.1
fallopian tube:
32.9
upper respiratory system:
32.2
LRRC17
ENSSSCG00000036452
ENSG00000128606
Leucine rich repeat containing 17
Tissue enhanced
Detected in many
heart:
29.1
male glands:
28.8
synovial tissue:
26.6
LRRC18
ENSSSCG00000010384
ENSG00000165383
Leucine rich repeat containing 18
Tissue enhanced
Detected in some
choroid plexus:
19.8
testis:
86.6
upper respiratory system:
24.4
LRRC23
ENSSSCG00000000679
ENSG00000010626
Leucine rich repeat containing 23
Tissue enhanced
Detected in many
fallopian tube:
24.2
lung:
15.1
testis:
26.6
upper respiratory system:
24.0
LRRC34
ENSSSCG00000024714
ENSG00000171757
Leucine rich repeat containing 34
Tissue enhanced
Detected in many
choroid plexus:
16.3
fallopian tube:
19.0
testis:
43.4
LRRC38
ENSSSCG00000003449
ENSG00000162494
Leucine rich repeat containing 38
Tissue enhanced
Detected in some
brain:
10.0
cartilage:
8.6
epididymis:
5.9
heart:
7.6
LRRC39
ENSSSCG00000006867
ENSG00000122477
Leucine rich repeat containing 39
Tissue enriched
Detected in many
lens:
138.1
LRRC3B
ENSSSCG00000011216
ENSG00000179796
Leucine rich repeat containing 3B
Tissue enhanced
Detected in many
brain:
16.9
male glands:
39.8
LRRC46
ENSSSCG00000017520
ENSG00000141294
Leucine rich repeat containing 46
Tissue enhanced
Detected in some
fallopian tube:
26.9
testis:
53.1
upper respiratory system:
32.8
LRRC49
ENSSSCG00000004976
ENSG00000137821
Leucine rich repeat containing 49
Tissue enhanced
Detected in some
brain:
29.9
pineal gland:
27.4
pituitary gland:
13.9
retina:
15.3
testis:
12.9
LRRC4C
ENSSSCG00000013286
ENSG00000148948
Leucine rich repeat containing 4C
Tissue enhanced
Detected in many
brain:
27.7
vagus nerve:
16.6
LRRC51
ENSSSCG00000014803
ENSG00000284922
Leucine-rich repeat-containing protein 51
Tissue enriched
Detected in many
testis:
72.5
LRRC52
ENSSSCG00000029977
ENSG00000162763
Leucine rich repeat containing 52
Tissue enriched
Detected in some
pineal gland:
127.5
LRRC56
ENSSSCG00000027045
ENSG00000161328
Leucine rich repeat containing 56
Tissue enhanced
Detected in many
fallopian tube:
17.4
lens:
25.9
testis:
44.3
upper respiratory system:
22.1
LRRC71
ENSSSCG00000006462
ENSG00000160838
Leucine rich repeat containing 71
Tissue enhanced
Detected in many
epididymis:
27.3
fallopian tube:
35.6
lung:
17.2
upper respiratory system:
17.3
LRRC73
ENSSSCG00000001676
ENSG00000204052
Leucine rich repeat containing 73
Tissue enhanced
Detected in some
brain:
14.7
testis:
18.7
LRRC75B
ENSSSCG00000010057
ENSG00000178026
Leucine rich repeat containing 75B
Tissue enhanced
Detected in many
lens:
17.5
male glands:
13.8
LRRC8B
ENSSSCG00000037101
ENSG00000197147
Leucine rich repeat containing 8 VRAC subunit B
Tissue enhanced
Detected in many
brain:
39.9
testis:
57.6
LRRC8C
ENSSSCG00000006917
ENSG00000171488
Leucine rich repeat containing 8 VRAC subunit C
Tissue enhanced
Detected in many
cartilage:
40.4
LRRC9
ENSSSCG00000005081
ENSG00000131951
Leucine rich repeat containing 9
Tissue enhanced
Detected in some
choroid plexus:
41.8
fallopian tube:
28.1
testis:
14.7
LRRIQ1
ENSSSCG00000000934
ENSG00000133640
Leucine rich repeats and IQ motif containing 1
Tissue enhanced
Detected in many
choroid plexus:
24.3
fallopian tube:
23.6
testis:
25.2
LRRK1
ENSSSCG00000004823
ENSG00000154237
Leucine rich repeat kinase 1
Low tissue specificity
Detected in all
LRRK2
ENSSSCG00000000784
ENSG00000188906
Leucine-rich repeat serine/threonine-protein kinase 2
Tissue enhanced
Detected in all
lymphoid tissue:
45.3
LRRN2
ENSSSCG00000015285
ENSG00000170382
Leucine rich repeat neuronal 2
Group enriched
Detected in many
brain:
22.8
choroid plexus:
12.8
LRRN3
ENSSSCG00000016652
ENSG00000173114
Leucine rich repeat neuronal 3
Tissue enhanced
Detected in many
brain:
27.0
pituitary gland:
20.4
retina:
18.2
LRRN4CL
ENSSSCG00000024917
ENSG00000177363
LRRN4 C-terminal like
Tissue enhanced
Detected in many
aorta:
82.7
mesothelial tissue:
67.1
synovial tissue:
43.1
LRRTM1
ENSSSCG00000023859
ENSG00000162951
Leucine rich repeat transmembrane neuronal 1
Tissue enhanced
Detected in some
brain:
23.3
lens:
19.3
vagus nerve:
8.4
LRRTM2
ENSSSCG00000034989
ENSG00000146006
Leucine rich repeat transmembrane neuronal 2
Tissue enhanced
Detected in all
brain:
24.5
LRRTM3
ENSSSCG00000010232
ENSG00000198739
Leucine rich repeat transmembrane neuronal 3
Tissue enhanced
Detected in many
brain:
29.4
heart:
15.5
vagus nerve:
14.9
LRRTM4
ENSSSCG00000008259
ENSG00000176204
Leucine rich repeat transmembrane neuronal 4
Tissue enhanced
Detected in many
brain:
32.1
retina:
17.9
LRTM1
ENSSSCG00000011461
ENSG00000144771
Leucine rich repeats and transmembrane domains 1
Tissue enriched
Detected in some
retina:
32.1
LRTM2
ENSSSCG00000000760
ENSG00000166159
Leucine rich repeats and transmembrane domains 2
Group enriched
Detected in some
brain:
13.1
retina:
31.2
LSM11
ENSSSCG00000038248
ENSG00000155858
LSM11, U7 small nuclear RNA associated
Low tissue specificity
Detected in all
LSP1
ENSSSCG00000031487
ENSG00000130592
Lymphocyte-specific protein 1
Tissue enhanced
Detected in many
lymphoid tissue:
85.3
LSS
ENSSSCG00000021418
ENSG00000160285
Lanosterol synthase
Tissue enhanced
Detected in all
liver:
70.7
LTBP1
ENSSSCG00000008510
ENSG00000049323
Latent transforming growth factor beta binding protein 1
Tissue enhanced
Detected in many
cartilage:
91.5
ovary:
106.5
LTBP2
ENSSSCG00000002368
ENSG00000119681
Latent transforming growth factor beta binding protein 2
Tissue enhanced
Detected in many
mesothelial tissue:
67.7
LTBP4
ENSSSCG00000033760
ENSG00000090006
Latent transforming growth factor beta binding protein 4
Low tissue specificity
Detected in many
LTC4S
ENSSSCG00000028488
ENSG00000213316
Leukotriene C4 synthase
Tissue enhanced
Detected in many
liver:
56.7
lymphoid tissue:
21.7
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