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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
EFNA5
ENSSSCG00000036520
ENSG00000184349
Ephrin A5
Low tissue specificity
Detected in many
EFNB1
ENSSSCG00000032728
ENSG00000090776
Ephrin B1
Low tissue specificity
Detected in all
EFNB2
ENSSSCG00000009535
ENSG00000125266
Ephrin-B2
Low tissue specificity
Detected in all
EFR3B
ENSSSCG00000022933
ENSG00000084710
EFR3 homolog B
Tissue enhanced
Detected in many
brain:
38.1
vagus nerve:
13.4
EFS
ENSSSCG00000002026
ENSG00000100842
Embryonal Fyn-associated substrate
Low tissue specificity
Detected in many
EGF
ENSSSCG00000009134
ENSG00000138798
Pro-epidermal growth factor precursor
Tissue enhanced
Detected in many
choroid plexus:
46.4
kidney:
90.0
male glands:
52.2
salivary gland:
32.6
EGFL6
ENSSSCG00000012121
ENSG00000198759
EGF like domain multiple 6
Tissue enhanced
Detected in many
cornea:
16.4
dura mater:
21.7
pituitary gland:
25.4
upper respiratory system:
14.7
EGFL7
ENSSSCG00000005828
ENSG00000172889
EGF like domain multiple 7
Low tissue specificity
Detected in all
EGFL8
ENSSSCG00000001434
ENSG00000241404
Epidermal growth factor-like protein 8
Tissue enhanced
Detected in all
stomach:
44.4
vagus nerve:
78.8
EGFLAM
ENSSSCG00000016848
ENSG00000164318
EGF like, fibronectin type III and laminin G domains
Tissue enhanced
Detected in many
mesothelial tissue:
40.6
retina:
39.6
EGFR
ENSSSCG00000022126
ENSG00000146648
Epidermal growth factor receptor precursor
Tissue enhanced
Detected in many
male glands:
80.6
EGLN3
ENSSSCG00000001963
ENSG00000129521
Egl-9 family hypoxia inducible factor 3
Tissue enhanced
Detected in many
lens:
59.1
EGR1
ENSSSCG00000014336
ENSG00000120738
Early growth response 1
Tissue enhanced
Detected in many
synovial tissue:
149.2
EGR2
ENSSSCG00000010224
ENSG00000122877
E3 SUMO-protein ligase EGR2
Tissue enhanced
Detected in many
epididymis:
35.7
synovial tissue:
43.8
vagus nerve:
64.5
EHBP1L1
ENSSSCG00000012988
ENSG00000173442
EH domain binding protein 1 like 1
Low tissue specificity
Detected in many
EHD2
ENSSSCG00000023371
ENSG00000024422
EH domain containing 2
Tissue enhanced
Detected in many
adipose tissue:
96.4
EHD3
ENSSSCG00000035987
ENSG00000013016
EH domain containing 3
Tissue enhanced
Detected in many
adrenal gland:
26.4
lens:
31.8
lymphoid tissue:
22.8
EHD4
ENSSSCG00000020666
ENSG00000103966
EH domain containing 4
Tissue enhanced
Detected in many
heart:
46.2
EIF5A2
ENSSSCG00000040946
ENSG00000163577
Eukaryotic translation initiation factor 5A2
Tissue enhanced
Detected in many
brain:
21.4
ELAVL2
ENSSSCG00000005130
ENSG00000107105
ELAV like RNA binding protein 2
Group enriched
Detected in some
brain:
36.2
large intestine:
11.5
retina:
9.4
testis:
13.6
ELAVL4
ENSSSCG00000037291
ENSG00000162374
ELAV like RNA binding protein 4
Tissue enriched
Detected in some
brain:
31.8
ELF1
ENSSSCG00000009440
ENSG00000120690
E74 like ETS transcription factor 1
Low tissue specificity
Detected in all
ELF2
ENSSSCG00000029920
ENSG00000109381
E74 like ETS transcription factor 2
Low tissue specificity
Detected in all
ELFN1
ENSSSCG00000030485
ENSG00000225968
Extracellular leucine rich repeat and fibronectin type III domain containing 1
Group enriched
Detected in some
brain:
7.6
retina:
22.1
testis:
10.9
ELFN2
ENSSSCG00000000131
ENSG00000166897
Extracellular leucine rich repeat and fibronectin type III domain containing 2
Tissue enhanced
Detected in some
brain:
32.5
retina:
8.5
ELL2
ENSSSCG00000014168
ENSG00000118985
Elongation factor for RNA polymerase II 2
Tissue enhanced
Detected in all
lens:
121.3
ELMOD1
ENSSSCG00000015002
ENSG00000110675
ELMO domain containing 1
Tissue enhanced
Detected in some
brain:
68.9
pineal gland:
15.6
pituitary gland:
17.7
retina:
20.8
ELN
ENSSSCG00000025858
ENSG00000049540
Elastin precursor
Tissue enriched
Detected in many
cartilage:
455.5
ELOVL1
ENSSSCG00000035238
ENSG00000066322
Elongation of very long chain fatty acids protein 1
Tissue enhanced
Detected in all
brain:
60.5
ELOVL5
ENSSSCG00000024149
ENSG00000012660
ELOVL fatty acid elongase 5
Tissue enhanced
Detected in all
adipose tissue:
86.4
ELOVL7
ENSSSCG00000035012
ENSG00000164181
ELOVL fatty acid elongase 7
Tissue enhanced
Detected in all
brain:
45.3
male glands:
53.5
EMB
ENSSSCG00000029484
ENSG00000170571
Embigin
Tissue enriched
Detected in many
choroid plexus:
76.2
EMILIN2
ENSSSCG00000003694
ENSG00000132205
Elastin microfibril interfacer 2
Tissue enhanced
Detected in many
ovary:
49.3
EMILIN3
ENSSSCG00000007358
ENSG00000183798
Elastin microfibril interfacer 3
Tissue enhanced
Detected in many
cartilage:
29.3
vagus nerve:
18.0
EML1
ENSSSCG00000027667
ENSG00000066629
Echinoderm microtubule associated protein like 1
Low tissue specificity
Detected in all
EML3
ENSSSCG00000013061
ENSG00000149499
Echinoderm microtubule associated protein like 3
Low tissue specificity
Detected in all
EML5
ENSSSCG00000002427
ENSG00000165521
Echinoderm microtubule associated protein like 5
Tissue enhanced
Detected in many
brain:
42.5
retina:
29.9
EML6
ENSSSCG00000026559
ENSG00000214595
Echinoderm microtubule associated protein like 6
Group enriched
Detected in some
brain:
11.4
pineal gland:
10.1
pituitary gland:
11.5
retina:
14.7
EMP1
ENSSSCG00000036723
ENSG00000134531
Epithelial membrane protein 1
Tissue enhanced
Detected in many
cornea:
92.1
mouth:
75.9
EMP2
ENSSSCG00000037065
ENSG00000213853
Epithelial membrane protein 2
Low tissue specificity
Detected in all
EN1
ENSSSCG00000015715
ENSG00000163064
Engrailed homeobox 1
Tissue enhanced
Detected in some
adipose tissue:
20.6
brain:
20.2
skeletal muscle:
19.1
skin:
11.2
EN2
ENSSSCG00000035324
ENSG00000164778
Engrailed homeobox 2
Tissue enriched
Detected in single
brain:
41.0
ENC1
ENSSSCG00000014072
ENSG00000171617
Ectodermal-neural cortex 1
Tissue enriched
Detected in many
brain:
112.4
ENDOD1
ENSSSCG00000014965
ENSG00000149218
Endonuclease domain containing 1
Tissue enhanced
Detected in many
brain:
36.4
ENO2
ENSSSCG00000028373
ENSG00000111674
Enolase 2
Group enriched
Detected in many
brain:
98.7
pineal gland:
66.7
pituitary gland:
33.0
retina:
46.9
ENO4
ENSSSCG00000010664
ENSG00000188316
Enolase family member 4
Tissue enhanced
Detected in many
choroid plexus:
15.9
fallopian tube:
39.7
upper respiratory system:
23.6
ENOPH1
ENSSSCG00000009246
ENSG00000145293
Enolase-phosphatase E1
Tissue enhanced
Detected in all
brain:
40.4
ENPP1
ENSSSCG00000004193
ENSG00000197594
Ectonucleotide pyrophosphatase/phosphodiesterase 1
Tissue enriched
Detected in many
cartilage:
130.3
ENPP4
ENSSSCG00000025788
ENSG00000001561
Ectonucleotide pyrophosphatase/phosphodiesterase 4
Tissue enhanced
Detected in all
brain:
49.6
lens:
58.8
ENPP5
ENSSSCG00000001715
ENSG00000112796
Ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)
Tissue enhanced
Detected in all
epididymis:
30.3
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