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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DRC1
ENSSSCG00000008568
ENSG00000157856
Dynein regulatory complex subunit 1
Tissue enhanced
Detected in many
fallopian tube:
38.9
testis:
22.9
upper respiratory system:
25.4
DRC7
ENSSSCG00000002817
ENSG00000159625
Dynein regulatory complex subunit 7
Tissue enhanced
Detected in some
fallopian tube:
28.6
lung:
19.0
testis:
21.3
upper respiratory system:
26.9
DRD1
ENSSSCG00000029037
ENSG00000184845
D(1A) dopamine receptor
Tissue enriched
Detected in some
brain:
47.5
DRD2
ENSSSCG00000015048
ENSG00000149295
D(2) dopamine receptor
Tissue enhanced
Detected in many
brain:
56.0
pineal gland:
16.5
pituitary gland:
32.6
DRD3
ENSSSCG00000011911
ENSG00000151577
Dopamine receptor D3
Tissue enriched
Detected in some
brain:
26.2
DRD5
ENSSSCG00000008730
ENSG00000169676
Dopamine receptor D5
Group enriched
Detected in some
brain:
13.5
retina:
11.6
DRGX
ENSSSCG00000037404
ENSG00000165606
Dorsal root ganglia homeobox
Low tissue specificity
Detected in all
DRP2
ENSSSCG00000012492
ENSG00000102385
Dystrophin related protein 2
Group enriched
Detected in some
brain:
31.8
vagus nerve:
94.2
DSCAM
ENSSSCG00000012072
ENSG00000171587
DS cell adhesion molecule
Group enriched
Detected in some
brain:
21.0
pituitary gland:
7.2
retina:
7.5
testis:
9.0
DSEL
ENSSSCG00000035941
ENSG00000171451
Dermatan sulfate epimerase-like
Tissue enhanced
Detected in many
pituitary gland:
37.4
thyroid gland:
28.7
DTHD1
ENSSSCG00000028471
ENSG00000197057
Death domain containing 1
Group enriched
Detected in some
brain:
21.9
fallopian tube:
54.2
lung:
17.8
upper respiratory system:
28.9
DTX3L
ENSSSCG00000011876
ENSG00000163840
Deltex E3 ubiquitin ligase 3L
Tissue enhanced
Detected in many
small intestine:
37.8
DUOX1
ENSSSCG00000004675
ENSG00000137857
Dual oxidase 1 precursor
Tissue enhanced
Detected in many
mouth:
24.9
thyroid gland:
16.7
DUSP1
ENSSSCG00000016991
ENSG00000120129
Dual specificity protein phosphatase 1
Tissue enhanced
Detected in all
male glands:
173.1
DUSP10
ENSSSCG00000010831
ENSG00000143507
Dual specificity phosphatase 10
Low tissue specificity
Detected in many
DUSP22
ENSSSCG00000031489
ENSG00000112679
Dual specificity phosphatase 22
Low tissue specificity
Detected in all
DUSP26
ENSSSCG00000015835
ENSG00000133878
Dual specificity phosphatase 26
Tissue enhanced
Detected in some
brain:
26.3
heart:
19.2
retina:
17.4
skeletal muscle:
49.5
DUSP3
ENSSSCG00000020744
ENSG00000108861
Dual specificity phosphatase 3
Low tissue specificity
Detected in all
DUSP4
ENSSSCG00000015850
ENSG00000120875
Dual specificity phosphatase 4
Tissue enhanced
Detected in many
ovary:
53.6
DUSP5
ENSSSCG00000040815
ENSG00000138166
Dual specificity phosphatase 5
Tissue enhanced
Detected in many
brain:
23.3
ovary:
27.1
DUSP6
ENSSSCG00000037910
ENSG00000139318
Dual specificity protein phosphatase 6
Low tissue specificity
Detected in many
DUSP8
ENSSSCG00000032911
ENSG00000184545
Dual specificity phosphatase 8
Tissue enhanced
Detected in many
brain:
29.0
heart:
28.8
DYDC1
ENSSSCG00000010338
ENSG00000170788
DPY30 domain containing 1
Tissue enhanced
Detected in some
brain:
10.0
testis:
21.2
DYNC1I1
ENSSSCG00000015335
ENSG00000158560
Dynein cytoplasmic 1 intermediate chain 1
Group enriched
Detected in many
brain:
30.5
lens:
119.7
DYNC1LI2
ENSSSCG00000036210
ENSG00000135720
Cytoplasmic dynein 1 light intermediate chain 2
Tissue enhanced
Detected in all
brain:
65.2
DYNLRB2
ENSSSCG00000031421
ENSG00000168589
Dynein light chain roadblock-type 2
Tissue enhanced
Detected in many
choroid plexus:
44.0
fallopian tube:
41.6
upper respiratory system:
44.9
DZANK1
ENSSSCG00000007094
ENSG00000089091
Double zinc ribbon and ankyrin repeat domains 1
Tissue enhanced
Detected in all
brain:
81.4
DZIP1
ENSSSCG00000009501
ENSG00000134874
DAZ interacting zinc finger protein 1
Tissue enhanced
Detected in all
brain:
71.9
E2F3
ENSSSCG00000040178
ENSG00000112242
E2F transcription factor 3
Low tissue specificity
Detected in all
E2F7
ENSSSCG00000000950
ENSG00000165891
E2F transcription factor 7
Tissue enhanced
Detected in many
brain:
13.0
lymphoid tissue:
16.4
upper respiratory system:
15.9
EAF2
ENSSSCG00000011880
ENSG00000145088
ELL associated factor 2
Tissue enhanced
Detected in many
lymphoid tissue:
40.8
small intestine:
24.3
upper respiratory system:
25.6
EBF1
ENSSSCG00000017046
ENSG00000164330
Early B cell factor 1
Tissue enhanced
Detected in many
adipose tissue:
65.3
bone marrow:
66.5
EBF2
ENSSSCG00000009655
ENSG00000221818
Early B cell factor 2
Tissue enhanced
Detected in many
adipose tissue:
22.9
vagus nerve:
35.3
EBF3
ENSSSCG00000010757
ENSG00000108001
Early B cell factor 3
Tissue enhanced
Detected in many
adipose tissue:
32.3
EBF4
ENSSSCG00000007171
ENSG00000088881
Early B cell factor 4
Low tissue specificity
Detected in many
ECE1
ENSSSCG00000003513
ENSG00000117298
Endothelin converting enzyme 1
Low tissue specificity
Detected in all
ECM1
ENSSSCG00000029230
ENSG00000143369
Extracellular matrix protein 1
Tissue enhanced
Detected in many
mouth:
84.5
synovial tissue:
66.5
ECM2
ENSSSCG00000028549
ENSG00000106823
Extracellular matrix protein 2
Low tissue specificity
Detected in many
EDDM3B
ENSSSCG00000021866
ENSG00000181552,ENSG00000181562
Epididymal secretory protein E3-beta precursor
Group enriched
Detected in many
ductus deferens:
54.5
epididymis:
177.7
male glands:
55.5
testis:
77.3
EDIL3
ENSSSCG00000026780
ENSG00000164176
EGF like repeats and discoidin domains 3
Group enriched
Detected in some
brain:
55.8
cartilage:
87.5
EDNRA
ENSSSCG00000009031
ENSG00000151617
Endothelin-1 receptor precursor
Tissue enhanced
Detected in many
heart:
41.0
EEF1A2
ENSSSCG00000040401
ENSG00000101210
Eukaryotic translation elongation factor 1 alpha 2
Tissue enhanced
Detected in many
brain:
76.6
heart:
176.3
skeletal muscle:
328.9
EEPD1
ENSSSCG00000039703
ENSG00000122547
Endonuclease/exonuclease/phosphatase family domain containing 1
Tissue enhanced
Detected in many
adipose tissue:
46.7
skeletal muscle:
33.4
EFCAB12
ENSSSCG00000011587
ENSG00000172771
EF-hand calcium-binding domain-containing protein 12
Tissue enhanced
Detected in some
choroid plexus:
28.6
fallopian tube:
28.4
lung:
15.9
upper respiratory system:
30.7
EFEMP1
ENSSSCG00000008397
ENSG00000115380
EGF-containing fibulin-like extracellular matrix protein 1 precursor
Tissue enhanced
Detected in all
cornea:
98.9
EFEMP2
ENSSSCG00000012971
ENSG00000172638
EGF containing fibulin extracellular matrix protein 2
Low tissue specificity
Detected in all
EFHB
ENSSSCG00000011205
ENSG00000163576
EF-hand domain family member B
Tissue enhanced
Detected in some
brain:
8.9
choroid plexus:
16.8
fallopian tube:
15.3
testis:
17.7
EFHC1
ENSSSCG00000002620
ENSG00000096093
EF-hand domain containing 1
Tissue enhanced
Detected in many
choroid plexus:
26.5
fallopian tube:
34.6
testis:
36.3
upper respiratory system:
37.3
EFHD1
ENSSSCG00000016290
ENSG00000115468
EF-hand domain family member D1
Tissue enhanced
Detected in many
brain:
53.9
testis:
44.6
vagus nerve:
50.3
EFNA1
ENSSSCG00000006530
ENSG00000169242
Ephrin-A1 precursor
Low tissue specificity
Detected in all
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