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Chromosome
1
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DCC
ENSSSCG00000040836
ENSG00000187323
DCC netrin 1 receptor
Tissue enhanced
Detected in some
brain:
20.5
epididymis:
22.8
male glands:
8.5
DCDC1
ENSSSCG00000013326
ENSG00000170959
Doublecortin domain containing 1
Tissue enhanced
Detected in many
cornea:
50.0
fallopian tube:
24.3
DCDC2
ENSSSCG00000001085
ENSG00000146038
Doublecortin domain containing 2
Tissue enhanced
Detected in many
choroid plexus:
29.7
fallopian tube:
33.3
kidney:
30.9
DCHS1
ENSSSCG00000029189
ENSG00000166341
Dachsous cadherin-related 1
Tissue enhanced
Detected in many
cartilage:
47.4
DCLK2
ENSSSCG00000009023
ENSG00000170390
Doublecortin like kinase 2
Tissue enhanced
Detected in all
brain:
39.9
lens:
55.9
DCLK3
ENSSSCG00000011241
ENSG00000163673
Doublecortin like kinase 3
Tissue enriched
Detected in many
lens:
53.8
DCN
ENSSSCG00000000915
ENSG00000011465
Decorin precursor
Group enriched
Detected in many
cartilage:
321.1
cornea:
591.4
DCTD
ENSSSCG00000015775
ENSG00000129187
DCMP deaminase
Tissue enhanced
Detected in all
male glands:
56.5
DCX
ENSSSCG00000012585
ENSG00000077279
Doublecortin
Group enriched
Detected in many
brain:
47.7
cartilage:
36.4
DDAH1
ENSSSCG00000040735
ENSG00000153904
Dimethylarginine dimethylaminohydrolase 1
Tissue enhanced
Detected in many
brain:
48.9
kidney:
54.5
DDAH2
ENSSSCG00000038514
ENSG00000213722
Dimethylarginine dimethylaminohydrolase 2
Low tissue specificity
Detected in all
DDB2
ENSSSCG00000013243
ENSG00000134574
Damage specific DNA binding protein 2
Group enriched
Detected in all
cornea:
24.7
lens:
97.1
DDC
ENSSSCG00000022009
ENSG00000132437
Dopa decarboxylase
Group enriched
Detected in some
brain:
23.8
kidney:
83.0
pineal gland:
80.8
DDHD2
ENSSSCG00000015818
ENSG00000085788
DDHD domain containing 2
Tissue enhanced
Detected in all
brain:
52.4
DDIT4
ENSSSCG00000031888
ENSG00000168209
DNA damage-inducible transcript 4 protein
Tissue enriched
Detected in all
cartilage:
191.5
DDIT4L
ENSSSCG00000025240
ENSG00000145358
DNA damage inducible transcript 4 like
Tissue enhanced
Detected in many
choroid plexus:
36.4
heart:
41.4
mesothelial tissue:
47.4
skeletal muscle:
43.1
DDO
ENSSSCG00000004401
ENSG00000203797
D-aspartate oxidase
Tissue enhanced
Detected in many
heart:
22.1
kidney:
22.5
male glands:
19.9
DDR2
ENSSSCG00000006338
ENSG00000162733
Discoidin domain receptor tyrosine kinase 2
Tissue enhanced
Detected in many
cartilage:
103.4
cervix:
79.1
DDX58
ENSSSCG00000030408
ENSG00000107201
Probable ATP-dependent RNA helicase DDX58
Low tissue specificity
Detected in all
DENND5B
ENSSSCG00000022636
ENSG00000170456
DENN domain containing 5B
Low tissue specificity
Detected in all
DES
ENSSSCG00000020785
ENSG00000175084
Desmin
Tissue enhanced
Detected in many
skeletal muscle:
301.6
smooth muscle:
547.0
urinary bladder:
220.0
DEUP1
ENSSSCG00000014943
ENSG00000165325
Deuterosome assembly protein 1
Tissue enhanced
Detected in many
fallopian tube:
18.7
testis:
51.4
DGAT2
ENSSSCG00000034102
ENSG00000062282
Diacylglycerol O-acyltransferase 2
Tissue enhanced
Detected in many
adipose tissue:
139.7
aorta:
74.8
bone marrow:
64.2
DGKB
ENSSSCG00000015355
ENSG00000136267
Diacylglycerol kinase beta
Tissue enhanced
Detected in many
brain:
68.3
salivary gland:
33.9
DGKD
ENSSSCG00000009432
ENSG00000077044
Diacylglycerol kinase delta
Low tissue specificity
Detected in all
DGKG
ENSSSCG00000022550
ENSG00000058866
Diacylglycerol kinase gamma
Tissue enhanced
Detected in many
brain:
47.0
thyroid gland:
27.8
DGKI
ENSSSCG00000016521
ENSG00000157680
Diacylglycerol kinase iota
Tissue enhanced
Detected in many
brain:
29.0
cartilage:
20.5
choroid plexus:
17.7
DGKQ
ENSSSCG00000027286
ENSG00000145214
Diacylglycerol kinase theta
Tissue enhanced
Detected in all
stomach:
31.0
DHCR24
ENSSSCG00000027525
ENSG00000116133
Delta(24)-sterol reductase
Tissue enhanced
Detected in all
liver:
83.6
ovary:
72.7
DHCR7
ENSSSCG00000021181
ENSG00000172893
7-dehydrocholesterol reductase
Tissue enhanced
Detected in all
liver:
65.5
ovary:
37.3
DHDH
ENSSSCG00000003158
ENSG00000104808
Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase
Tissue enriched
Detected in many
lens:
112.6
DHH
ENSSSCG00000000188
ENSG00000139549
Desert hedgehog
Tissue enriched
Detected in some
vagus nerve:
39.7
DHRS13
ENSSSCG00000017778
ENSG00000167536
Dehydrogenase/reductase 13
Low tissue specificity
Detected in all
DHRS3
ENSSSCG00000003439
ENSG00000162496
Dehydrogenase/reductase 3
Low tissue specificity
Detected in all
DHRS9
ENSSSCG00000015930
ENSG00000073737
Dehydrogenase/reductase 9
Tissue enhanced
Detected in many
large intestine:
10.0
lymphoid tissue:
13.6
upper respiratory system:
31.8
DIO2
ENSSSCG00000040638
ENSG00000211448
Type II iodothyronine deiodinase
Tissue enhanced
Detected in many
mouth:
29.3
pituitary gland:
33.9
thyroid gland:
45.9
DIO3
ENSSSCG00000036990
ENSG00000197406
Iodothyronine deiodinase 3
Tissue enhanced
Detected in many
brain:
11.6
skin:
12.5
DIRAS1
ENSSSCG00000038013
ENSG00000176490
DIRAS family GTPase 1
Tissue enhanced
Detected in many
brain:
30.6
pineal gland:
15.5
DIRAS3
ENSSSCG00000003797
ENSG00000162595
GTP-binding protein Di-Ras3
Group enriched
Detected in some
brain:
96.0
pineal gland:
220.4
pituitary gland:
68.6
DISP2
ENSSSCG00000004776
ENSG00000140323
Dispatched RND transporter family member 2
Tissue enriched
Detected in many
brain:
27.8
DISP3
ENSSSCG00000003417
ENSG00000204624
Dispatched RND transporter family member 3
Tissue enhanced
Detected in some
brain:
13.0
epididymis:
5.6
pineal gland:
13.9
retina:
5.4
DIXDC1
ENSSSCG00000015036
ENSG00000150764
DIX domain containing 1
Tissue enhanced
Detected in all
brain:
43.0
lens:
38.7
DKK2
ENSSSCG00000032094
ENSG00000155011
Dickkopf WNT signaling pathway inhibitor 2
Tissue enhanced
Detected in many
cornea:
29.4
ovary:
44.1
DLEC1
ENSSSCG00000011249
ENSG00000008226
Deleted in lung and esophageal cancer 1
Tissue enhanced
Detected in many
fallopian tube:
22.8
retina:
23.7
DLG3
ENSSSCG00000012375
ENSG00000082458
Discs large MAGUK scaffold protein 3
Tissue enhanced
Detected in many
male glands:
43.5
DLG4
ENSSSCG00000024285
ENSG00000132535
Discs large MAGUK scaffold protein 4
Tissue enhanced
Detected in all
brain:
59.7
pineal gland:
35.1
retina:
43.1
DLGAP2
ENSSSCG00000015746
ENSG00000198010
Disks large-associated protein 2
Group enriched
Detected in some
brain:
16.6
lens:
10.7
DLGAP4
ENSSSCG00000007317
ENSG00000080845
DLG associated protein 4
Low tissue specificity
Detected in all
DLK1
ENSSSCG00000035805
ENSG00000185559
Protein delta homolog 1 isoform B precursor
Tissue enhanced
Detected in some
brain:
56.5
kidney:
15.0
pituitary gland:
63.0
DLL1
ENSSSCG00000027726
ENSG00000198719
Delta like canonical Notch ligand 1
Tissue enhanced
Detected in many
lymphoid tissue:
38.3
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