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Human disease related genes
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CHRNE
ENSSSCG00000017909
ENSG00000108556
Cholinergic receptor nicotinic epsilon subunit
Tissue enhanced
Detected in many
brain:
9.4
mouth:
11.3
salivary gland:
11.4
skeletal muscle:
17.4
CHST1
ENSSSCG00000013273
ENSG00000175264
Carbohydrate sulfotransferase 1
Tissue enhanced
Detected in many
brain:
37.4
cornea:
15.8
CHST11
ENSSSCG00000000837
ENSG00000171310
Carbohydrate sulfotransferase 11
Tissue enhanced
Detected in many
cartilage:
65.0
CHST14
ENSSSCG00000004771
ENSG00000169105
Carbohydrate sulfotransferase 14
Low tissue specificity
Detected in all
CHST15
ENSSSCG00000029482
ENSG00000182022
Carbohydrate sulfotransferase 15
Tissue enhanced
Detected in many
cartilage:
47.5
lymphoid tissue:
44.7
CHST2
ENSSSCG00000022031
ENSG00000175040
Carbohydrate sulfotransferase 2
Tissue enhanced
Detected in many
brain:
34.6
thyroid gland:
23.3
CHST3
ENSSSCG00000023662
ENSG00000122863
Carbohydrate sulfotransferase 3
Tissue enhanced
Detected in many
cartilage:
38.4
CHST8
ENSSSCG00000035222
ENSG00000124302
Carbohydrate sulfotransferase 8
Tissue enhanced
Detected in some
brain:
11.1
lymphoid tissue:
12.5
pituitary gland:
16.7
testis:
10.1
CHST9
ENSSSCG00000003721
ENSG00000154080
Carbohydrate sulfotransferase 9
Tissue enhanced
Detected in many
endometrium:
15.0
fallopian tube:
29.3
gallbladder:
24.9
pituitary gland:
14.7
CHSY3
ENSSSCG00000035069
ENSG00000198108
Chondroitin sulfate synthase 3
Tissue enhanced
Detected in many
ovary:
18.7
synovial tissue:
29.2
CHURC1-FNTB
ENSSSCG00000002281
ENSG00000125954
Protein farnesyltransferase subunit beta
Low tissue specificity
Detected in all
CIDEA
ENSSSCG00000024644
ENSG00000176194
Cell death activator CIDE-A
Tissue enhanced
Detected in many
adipose tissue:
75.3
aorta:
37.8
bone marrow:
43.0
cornea:
28.4
CILP2
ENSSSCG00000013934
ENSG00000160161
Cartilage intermediate layer protein 2
Tissue enriched
Detected in some
cartilage:
152.8
CISD3
ENSSSCG00000022187
ENSG00000277972
CDGSH iron sulfur domain 3
Low tissue specificity
Detected in all
CITED1
ENSSSCG00000012409
ENSG00000125931
Cbp/p300-interacting transactivator 1
Tissue enhanced
Detected in many
adrenal gland:
47.3
testis:
101.4
CITED2
ENSSSCG00000004142
ENSG00000164442
Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2
Low tissue specificity
Detected in all
CITED4
ENSSSCG00000033952
ENSG00000179862
Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4
Tissue enhanced
Detected in many
male glands:
43.1
salivary gland:
72.2
upper respiratory system:
46.4
CKB
ENSSSCG00000021220
ENSG00000166165
Creatine kinase B-type
Tissue enhanced
Detected in many
brain:
121.7
pineal gland:
104.9
retina:
70.4
smooth muscle:
65.9
CLCA2
ENSSSCG00000006935
ENSG00000137975
Chloride channel accessory 2
Tissue enhanced
Detected in all
cornea:
39.9
male glands:
40.5
skin:
26.2
CLCN5
ENSSSCG00000023026
ENSG00000171365
H(+)/Cl(-) exchange transporter 5
Tissue enhanced
Detected in many
kidney:
46.2
CLDN11
ENSSSCG00000011747
ENSG00000013297,ENSG00000285218
Claudin-11
Tissue enriched
Detected in some
brain:
149.9
CLDN19
ENSSSCG00000034921
ENSG00000164007
Claudin-19
Tissue enhanced
Detected in all
kidney:
22.5
vagus nerve:
79.4
CLDN2
ENSSSCG00000037234
ENSG00000165376
Claudin-2
Tissue enhanced
Detected in some
choroid plexus:
53.5
gallbladder:
48.1
kidney:
57.6
small intestine:
42.2
stomach:
32.9
CLDN8
ENSSSCG00000012030
ENSG00000156284
Claudin-8
Tissue enhanced
Detected in many
breast:
64.0
kidney:
44.5
male glands:
37.7
thyroid gland:
54.2
CLDND1
ENSSSCG00000011980
ENSG00000080822
Claudin domain-containing protein 1
Low tissue specificity
Detected in all
CLEC14A
ENSSSCG00000023760
ENSG00000176435
C-type lectin domain containing 14A
Low tissue specificity
Detected in many
CLEC1A
ENSSSCG00000000649
ENSG00000150048
C-type lectin domain family 1 member A
Low tissue specificity
Detected in many
CLEC2L
ENSSSCG00000038147
ENSG00000236279
C-type lectin domain family 2 member L
Group enriched
Detected in some
brain:
30.5
choroid plexus:
8.1
heart:
26.3
retina:
8.6
CLGN
ENSSSCG00000026360
ENSG00000153132
Calmegin precursor
Group enriched
Detected in many
choroid plexus:
20.8
male glands:
21.9
testis:
81.2
CLIC6
ENSSSCG00000028112
ENSG00000159212
Chloride intracellular channel 6
Tissue enriched
Detected in some
choroid plexus:
192.2
CLMN
ENSSSCG00000002494
ENSG00000165959
Calmin (calponin-like, transmembrane)
Tissue enhanced
Detected in all
testis:
60.7
CLN6
ENSSSCG00000004957
ENSG00000128973
Ceroid-lipofuscinosis neuronal protein 6
Low tissue specificity
Detected in all
CLSTN1
ENSSSCG00000003396
ENSG00000171603
Calsyntenin 1
Tissue enhanced
Detected in all
brain:
86.7
CLSTN3
ENSSSCG00000000672
ENSG00000139182
Calsyntenin 3
Group enriched
Detected in many
brain:
58.8
pineal gland:
44.5
CLU
ENSSSCG00000009668
ENSG00000120885
Clusterin Clusterin beta chain Clusterin alpha chain
Tissue enhanced
Detected in all
cartilage:
638.2
CLUL1
ENSSSCG00000039398
ENSG00000079101
Clusterin like 1
Group enriched
Detected in some
pineal gland:
47.3
retina:
134.4
CLVS1
ENSSSCG00000006230
ENSG00000177182
Clavesin 1
Tissue enhanced
Detected in many
brain:
37.4
pineal gland:
20.6
CLYBL
ENSSSCG00000009519
ENSG00000125246
Citrate lyase beta like
Tissue enhanced
Detected in all
choroid plexus:
31.8
CMAH
ENSSSCG00000001099
Cytidine monophosphate-N-acetylneuraminic acid hydroxylase
Tissue enhanced
Detected in many
esophagus:
62.7
salivary gland:
55.2
upper respiratory system:
109.7
CMTM2
ENSSSCG00000031837
ENSG00000140932
CKLF like MARVEL transmembrane domain containing 2
Tissue enriched
Detected in some
testis:
101.3
CMTM3
ENSSSCG00000038151
ENSG00000140931
CKLF like MARVEL transmembrane domain containing 3
Low tissue specificity
Detected in many
CMTM5
ENSSSCG00000002028
ENSG00000166091
CKLF-like MARVEL transmembrane domain-containing protein 5
Tissue enhanced
Detected in some
brain:
61.9
heart:
13.2
vagus nerve:
29.0
CNDP1
ENSSSCG00000004869
ENSG00000150656
Beta-Ala-His dipeptidase
Tissue enhanced
Detected in many
brain:
15.7
epididymis:
26.7
kidney:
52.6
CNGB1
ENSSSCG00000002811
ENSG00000070729
Cyclic nucleotide gated channel beta 1
Tissue enriched
Detected in some
retina:
71.5
CNGB3
ENSSSCG00000006134
ENSG00000170289
Cyclic nucleotide gated channel beta 3
Tissue enriched
Detected in some
pineal gland:
110.0
CNIH3
ENSSSCG00000034972
ENSG00000143786
Cornichon family AMPA receptor auxiliary protein 3
Tissue enhanced
Detected in many
adipose tissue:
19.9
brain:
20.2
pituitary gland:
21.4
CNKSR2
ENSSSCG00000012164
ENSG00000149970
Connector enhancer of kinase suppressor of Ras 2
Tissue enhanced
Detected in many
brain:
46.2
lens:
24.9
vagus nerve:
15.1
CNMD
ENSSSCG00000009442
ENSG00000136110
Chondromodulin
Tissue enhanced
Detected in some
cartilage:
23.0
choroid plexus:
102.2
pineal gland:
28.0
CNN1
ENSSSCG00000013614
ENSG00000130176
Calponin-1
Tissue enhanced
Detected in many
smooth muscle:
549.0
urinary bladder:
230.6
CNN2
ENSSSCG00000039542
ENSG00000064666
Calponin 2
Low tissue specificity
Detected in all
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