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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
15
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
A1BG
ENSSSCG00000004001
ENSG00000121410
Alpha-1-B glycoprotein
Tissue enriched
Detected in some
liver:
277.4
A4GALT
ENSSSCG00000026962
ENSG00000128274
Alpha 1,4-galactosyltransferase (P blood group)
Low tissue specificity
Detected in many
AAK1
ENSSSCG00000008337
ENSG00000115977
AP2-associated protein kinase 1
Low tissue specificity
Detected in all
AARD
ENSSSCG00000006013
ENSG00000205002
Alanine and arginine rich domain containing protein
Tissue enhanced
Detected in some
choroid plexus:
22.4
lymphoid tissue:
11.8
testis:
20.4
AATK
ENSSSCG00000017141
ENSG00000181409
Apoptosis associated tyrosine kinase
Group enriched
Detected in many
brain:
26.3
vagus nerve:
92.2
ABCA6
ENSSSCG00000017256
ENSG00000154262
ATP binding cassette subfamily A member 6
Tissue enhanced
Detected in many
liver:
74.8
ABCA8
ENSSSCG00000026473
ENSG00000141338
ATP binding cassette subfamily A member 8
Tissue enhanced
Detected in many
liver:
61.6
vagus nerve:
33.1
ABCA9
ENSSSCG00000017257
ENSG00000154258
ATP binding cassette subfamily A member 9
Tissue enhanced
Detected in many
vagus nerve:
43.9
ABCB9
ENSSSCG00000009784
ENSG00000150967
ATP binding cassette subfamily B member 9
Tissue enhanced
Detected in many
brain:
15.6
ABCC8
ENSSSCG00000013378
ENSG00000006071
ATP binding cassette subfamily C member 8
Group enriched
Detected in some
brain:
17.6
vagus nerve:
57.7
ABHD11
ENSSSCG00000007715
ENSG00000106077
Abhydrolase domain containing 11
Low tissue specificity
Detected in all
ABHD12B
ENSSSCG00000005023
ENSG00000131969
Abhydrolase domain containing 12B
Low tissue specificity
Detected in all
ABHD17B
ENSSSCG00000021802
ENSG00000107362
Protein ABHD17B
Tissue enhanced
Detected in all
brain:
36.4
ABHD4
ENSSSCG00000002051
ENSG00000100439
Abhydrolase domain containing 4
Tissue enhanced
Detected in all
testis:
61.8
ABHD8
ENSSSCG00000031877
ENSG00000127220
Abhydrolase domain containing 8
Tissue enhanced
Detected in all
brain:
25.1
ABI3BP
ENSSSCG00000011959
ENSG00000154175
ABI family member 3 binding protein
Group enriched
Detected in many
cartilage:
276.5
penis:
99.9
ABL1
ENSSSCG00000005706
ENSG00000097007
ABL proto-oncogene 1, non-receptor tyrosine kinase
Tissue enriched
Detected in all
cervix:
131.8
ABLIM1
ENSSSCG00000010651
ENSG00000099204
Actin binding LIM protein 1
Tissue enhanced
Detected in all
heart:
201.3
ABLIM2
ENSSSCG00000008721
ENSG00000163995
Actin binding LIM protein family member 2
Tissue enhanced
Detected in many
brain:
26.0
mouth:
18.9
skeletal muscle:
38.1
ABLIM3
ENSSSCG00000014430
ENSG00000173210
Actin binding LIM protein family member 3
Tissue enhanced
Detected in many
brain:
53.4
ABR
ENSSSCG00000017804
ENSG00000159842
Active breakpoint cluster region-related protein
Low tissue specificity
Detected in all
ABTB2
ENSSSCG00000013303
ENSG00000166016
Ankyrin repeat and BTB domain containing 2
Low tissue specificity
Detected in all
ACAP1
ENSSSCG00000017943
ENSG00000072818
ArfGAP with coiled-coil, ankyrin repeat and PH domains 1
Tissue enhanced
Detected in many
lymphoid tissue:
47.0
stomach:
33.7
ACAT2
ENSSSCG00000004049
ENSG00000120437
Acetyl-CoA acetyltransferase 2
Tissue enhanced
Detected in all
brain:
44.7
cornea:
51.1
ACBD7
ENSSSCG00000038184
ENSG00000176244
Acyl-CoA binding domain containing 7
Tissue enhanced
Detected in many
brain:
14.0
retina:
23.0
ACHE
ENSSSCG00000030303
ENSG00000087085
Acetylcholinesterase (Cartwright blood group)
Tissue enriched
Detected in many
brain:
39.3
ACKR1
ENSSSCG00000036223
ENSG00000213088
Atypical chemokine receptor 1
Tissue enhanced
Detected in many
cartilage:
39.6
mesothelial tissue:
62.6
ACKR3
ENSSSCG00000016322
ENSG00000144476
Atypical chemokine receptor 3
Tissue enhanced
Detected in all
cartilage:
106.7
ACOT7
ENSSSCG00000003377
ENSG00000097021
Acyl-CoA thioesterase 7
Tissue enhanced
Detected in many
brain:
39.2
testis:
31.3
ACP4
ENSSSCG00000024736
ENSG00000142513
Acid phosphatase 4
Tissue enhanced
Detected in all
lens:
40.4
testis:
36.4
ACP6
ENSSSCG00000006697
ENSG00000162836
Acid phosphatase 6, lysophosphatidic
Low tissue specificity
Detected in all
ACSBG1
ENSSSCG00000001760
ENSG00000103740
Acyl-CoA synthetase bubblegum family member 1
Tissue enhanced
Detected in many
brain:
37.3
vagus nerve:
16.3
ACSL1
ENSSSCG00000015784
ENSG00000151726
Long-chain-fatty-acid--CoA ligase 1
Tissue enhanced
Detected in all
liver:
113.3
skeletal muscle:
63.6
ACSM3
ENSSSCG00000007857
ENSG00000005187
Acyl-CoA synthetase medium chain family member 3
Tissue enhanced
Detected in many
fallopian tube:
50.3
liver:
26.6
ACTA2
ENSSSCG00000010447
ENSG00000107796
Actin, aortic smooth muscle
Tissue enhanced
Detected in many
ductus deferens:
294.9
endometrium:
265.1
penis:
206.0
ACTG2
ENSSSCG00000008294
ENSG00000163017
Actin, gamma 2, smooth muscle, enteric
Tissue enriched
Detected in many
smooth muscle:
747.6
ACTL6B
ENSSSCG00000007670
ENSG00000077080
Actin like 6B
Tissue enhanced
Detected in some
brain:
12.7
liver:
11.1
pituitary gland:
8.3
testis:
5.6
ACTN1
ENSSSCG00000036702
ENSG00000072110
Alpha-actinin-1
Tissue enhanced
Detected in all
smooth muscle:
150.4
ACTN2
ENSSSCG00000010144
ENSG00000077522
Alpha-actinin-2
Group enriched
Detected in many
heart:
140.1
skeletal muscle:
224.2
ACVR1B
ENSSSCG00000000233
ENSG00000135503
Activin receptor type-1B precursor
Low tissue specificity
Detected in all
ACVR1C
ENSSSCG00000015873
ENSG00000123612
Activin A receptor type 1C
Tissue enhanced
Detected in some
adipose tissue:
28.6
brain:
22.2
liver:
10.2
ACVR2A
ENSSSCG00000015669
ENSG00000121989
Activin receptor type-2A precursor
Tissue enhanced
Detected in all
lens:
65.2
ADA
ENSSSCG00000021255
ENSG00000196839
Adenosine deaminase
Tissue enhanced
Detected in many
mouth:
124.3
small intestine:
43.7
stomach:
31.6
ADAM11
ENSSSCG00000017349
ENSG00000073670
ADAM metallopeptidase domain 11
Tissue enhanced
Detected in all
brain:
25.4
ADAM12
ENSSSCG00000010746
ENSG00000148848
ADAM metallopeptidase domain 12
Tissue enhanced
Detected in many
ovary:
64.8
ADAM22
ENSSSCG00000015297
ENSG00000008277
ADAM metallopeptidase domain 22
Tissue enriched
Detected in many
brain:
51.4
ADAM23
ENSSSCG00000016131
ENSG00000114948
ADAM metallopeptidase domain 23
Tissue enhanced
Detected in many
brain:
34.4
vagus nerve:
14.1
ADAM33
ENSSSCG00000007145
ENSG00000149451
ADAM metallopeptidase domain 33
Tissue enhanced
Detected in many
cervix:
43.8
mesothelial tissue:
42.3
ADAMTS1
ENSSSCG00000012026
ENSG00000154734
A disintegrin and metalloproteinase with thrombospondin motifs 1 precursor
Tissue enhanced
Detected in many
aorta:
54.6
gallbladder:
47.1
mesothelial tissue:
50.9
ADAMTS14
ENSSSCG00000010272
ENSG00000138316
ADAM metallopeptidase with thrombospondin type 1 motif 14
Tissue enhanced
Detected in many
cornea:
22.4
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